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10 protocols using ciglitazone

1

Apoptosis Induction by PPARγ Antagonists

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Thiazolidinediones (rosiglitazone, pioglitazone, ciglitazone) and the PPARγ antagonist GW9662 were provided from Cayman Chemical (Ann Arbor, MI, USA). Soluble recombinant TRAIL, proteasome inhibitor MG132, caspase 9 specific inhibitor (Z-LEHD-FMK) and propidium iodide (PI) were purchased from Sigma (Saint Quentin Fallavier, France). Caspase 8 inhibitor (Z-IETD-FMK) was from Bachem (Heidelberg, Germany). Anti-DR4 and DR5 blocking antibodies were from Alexis Biochemicals (Lausanne, Switzerland).
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2

Peroxisome Proliferator-Activated Receptor Agonists and Antioxidants

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Peroxisome proliferator-activated receptor (PPAR) agonists fenofibrate, troglitazone, bezafibrate, 15-deoxy-Δ12,14-Prostaglandin J2 (PGJ2), ciglitazone, rosiglitazone, pioglitazone, and MCC-555 were from Cayman Chemical (Ann Arbor, MI, USA). Antioxidants 2,2,5,7,8-Pentamethyl-6-chromanol (PMC), 4-hydroxy-TEMPO (TEMPO, a superoxide dismutase mimic) and Tiron were from Sigma (St. Louis, MO), MCI-186 (MCI), Trolox and DL-a-lipoic acid (lipoic acid) were from Cayman Chemical, N-Acetyl-L-cysteine (NAC) was from Abcam (Cambridge, MA), and elamipretide (ELAM) was from Muse Chem (Fairfield, NJ). Trolox amide analogs (669, 738, 829) were from ChemBridge (San Diego, CA). Inflammasome inhibitors MCC950 and Isoliquiritigenin were from Cayman Chemical. The NADPH-oxidases inhibitor apocynin (APO) was from Abcam and diphenyleneiodonium (DPI) was from Sigma.
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3

Adipocyte Differentiation Pathway Modulators

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3-Isobutyl-1-methyl-xanthine (IBMX), insulin, dexamethasone, and isoproterenol were purchased from Sigma Chemical Co. l-N5-(1-lminoethyl) ornithine dihydrochloride (L-NIO), KT5720, ODQ, wortmannin, and diethylamine NONOate (DeaNONOate) were from CALBIOCHEM, troglitazone, GW9662, and ciglitazone were from CAYMAN CHEMICAL COMPANY, and auranofin was from Alexis Biochemicals.
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4

Modulating PPARγ Signaling Pathways

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All PPARγ ligands and antagonist: Rosiglitazone (10μM), GW9662 (10μM) pioglitazone (10μM), troglitazone (10μM) and ciglitazone (10μM) (Cayman chemical) were prepared in DMSO following the manufacturer’s recommendations and diluted in RPMI. Sodium butyrate (But, 2mM) was from Sigma-aldrich.
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5

PPARβ/δ and PPARγ Agonists in Cell Assays

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The PPARβ/δ activator GW501516 was provided by Enzo Life Sciences (Villeurbanne, France). Ciglitazone (PPARγ agonist) was purchased from Cayman Chemical (Ann Arbor, MI). The final concentration of organic solvent (dimethylsulfoxide) was less than 0.1% which had no effect on cell viability.
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6

Quantification of Lipid Mediators

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Ammonium acetate was from Sigma Aldrich (St. Louis, MO). HPLC-grade solvents acetonitrile and methanol were from Fisher Scientific (Pittsburgh, PA, USA) and VWR (Radnor, PA, USA). Deionized water was generated in-house. PGA2, PGD2, PGE2, PGF2α, PGJ2, 15d-PGJ2, 15d-PGJ2-d4, NS-398, CAY-10404, ciglitazone, troglitazone and staurosporine were from Cayman Chemical. ABT-263 was from Apex Biotechnology. The dihomo-15d-PGJ2 standard was synthesized by Jubilant Chemsys (Bangalore, India). TRAIL was from Abcam.
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7

Hepatitis B Virus Entry Inhibitor Screening

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Troglitazone was purchased from AdooQ BioScience. Ciglitazone, mitoglitazone, and trolox were purchased from Cayman Chemical. Rosiglitazone, pioglitazone, darglitazone, netoglitazone, and SR-202 were purchased from Sigma-Aldrich. Balaglitazone was purchased from MedChemExpress. Inolitazone was purchased from ChemScene. Bafilomycin A1 was purchased from Wako. A preS1 peptide consisting of aa 2-48 of the HBV preS1 region with amino-terminal myristoylation, as well as carboxy-terminal 6-carboxytetramethylrhodamine (TAMRA)-conjugated derivatives thereof, were synthesized by Scrum, Inc. The NTCP peptide fragment library was synthesized by Sigma-Aldrich. Entecavir was purchased from Santa Cruz Biotechnology.
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8

Apoptosis Regulation by PPAR Modulators

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Propidium iodide (PI), diphenyleneiodonium (DPI), and antioxidants-including N-acetyl cysteine (NAC) were purchased from Sigma-Aldrich (St. Louis, MO). Ciglitazone and the selective PPARγ antagonist GW9662 were obtained from Cayman (Ann Arbor, MI). The PPAR agonist candidate CB11 was obtained from ChemBridge. DCF-DA (2′, 7′-dichlorodihydrofluorescein diacetate) was obtained from Invitrogen (Carlsbad, CA). The caspase inhibitor, z-VAD-fmk, the caspase-3 inhibitor, z-DEVD-fmk and the caspase-9 inhibitor, z-LEHD-fmk were obtained from Calbiochem (LaJolla, CA). The ATM inhibitors, KU60019 and KU55933, were purchased from calbiochem.
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9

Receptor Binding Assay Protocols

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SP, HK-1, and NKA were purchased from Sigma Chemical Company. L732138 and GR159897 were purchased from Tocris. Rosiglitazone, ciglitazone, pioglitazone, 15d-PGJ2 and GW 9662 were purchased from Cayman Chemicals.
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10

Apoptosis Assay with Antioxidants

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Propidium iodide (PI) and antioxidants, including N-acetylcysteine (NAC), diphenyleneiodonium (DPI, a Nox inhibitor), and apocynin (Apo, an ROS inhibitor) were purchased from Sigma Chemical (St. Louis, MO USA). Ciglitazone and the selective PPARɣ antagonist, GW9662, were obtained from Cayman (Ann Arbor, MI). PPZ023 was synthesized in the Department of Chemistry at the College of National Science, Kongju National University (Gongju, Korea). PPZ023 was dissolved in dimethyl sulfoxide (DMSO) as a 1 mM stock solution. Annexin V-FITC kits were purchased from Biovision (Palo Alto, CA, USA).
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