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10 protocols using cd69 apc cy7

1

Comprehensive Immune Cell Phenotyping

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Cell surface and intracellular molecular expressions were evaluated by flow cytometry using CytoFLEX (BeckmanCoulter, U.S.A.). Fluorescein-conjugated mouse anti-human antibodies were used, including CD3-Alexa Fluor 700, CD3-BV650, CD8-BV786, CD8-PerCP/Cy5.5, CD45RA-APC/CY7, CCR7-PE/CY7,CD27-PE, CD28-BV421, CD69-APC/CY7, CD103-BV605, CXCR3-BV510, HLA-DR-APC, CD39-BV421, PD-1-PE, CD127-PE/CY7, CD62L-PE/CY7, Perforin-APC, Granzyme B-PE, IFN-γ-PE, and IL-4-APC (Biolegend, UK). For cell-surface staining, single-cell suspensions were stained on ice for 30 min in PBS with 1% fetal bovine serum (FBS). For intracellular staining, cells were fixed and permeabilized using the Fix/Perm kit (BD Biosciences, U.S.A.). To detect intracellular cytokines, CD8+T cells were stimulated for 6 h with phorbol 12-myristate 13-acetate (PMA; 1 μg/mL; Sigma) and ionomycin (1 μg/mL; Sigma), and 4 h with GolgiStop (1 μL/mL; BD Biosciences) in a round-bottom 96-well plate. Thereafter, cells were harvested, stained for surface expression, and then fixed and permeabilized for intracellular staining. Flow cytometry data was analyzed using FlowJo software (BD, UK) and CytoExpert software (Beckman Coulter, U.S.A.).
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2

Multiparameter Flow Cytometry Analysis

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Tissues were harvested and processed as described previously (11 (link)). After incubation with anti-FcReceptor, cells were stained with CD44-FITC, CD8α-PerCP (eBioscience), CD69-APC-Cy7, CD19-BV510, and CD4-BV711 (BioLegend) for 20 min on ice. For intracellular staining of FoxP3-PE (eBioscience), cells were fixed and permeabilized with Mouse Foxp3 Buffer set (BD Biosciences) after surface staining, according to the manufacturer’s instructions. Samples were run on a BD LSRFortessa analyzer and the results evaluated in FlowJo. Data were plotted in GraphPad Prism for statistical analysis.
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3

Multi-parameter Immune Cell Profiling

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Cells were incubated 10 min with the TruStain fcX (clone 93) washed and incubated with the antibodies during 20 minutes followed by two washes with PBS. Monoclonal antibodies specific for mouse molecules were purchased from Biolegend: CD3-FITC (clone 17A2), CD3-APC (clone 17A2), CD3-PerCp/Cy5.5 (clone 17A2), CD8-Brillant Violet 421 (clone 53-6.7), CD45-PE (clone 30-F11), CD45-PErCP(clone 30-F11), CD45.1-PE/Cy7 (clone A20), CD45.1-FITC (clone A20), CD103-APC (clone 2E7), CD103-PerCP (clone 2E7), CD69-APC/Cy7 (clone H1.2F3), CD69-APC (clone H1.2F3), CD44-PerCP (clone IM7), IFN-γ-PE (clone XMG1.2), IFN-γ-APC (clone XMG1.2), TNF-α-APC/Cy7 (clone MP6-XT22), CD11b-FITC (clone M1/70), CD207-PE (clone 4C7), XCR1-APC (clone ZET), XCR1-PerCP-Cy5.5 (clone ZET), CD11c-PE/Cy7 (clone N418), MHCII-APC/Cy7 (clone M5/114.15.2), CD24-PerCP-Cy5.5 (clone M1/69), CD80-APC (clone 16-10A1), CD80-PE/Cy7 (clone 16-10A1), CD86 Brilliant Violet 421 (clone GL-1), CCR7-PE/Cy7 (clone 4B12), IL-2-PE/Cy7 (clone JES6-5H4) IL-12/23-APC (clone C15.6), granzyme B-APC (clone GB11) and viability dye Zombie Aqua (ref 423101). Samples were acquired in a FACSCanto II cytometer (BD Bioscience) and data were analyzed using FlowJo version X.0.7 (Tree Star, Inc.). Gating strategies for all flow cytometry experiments are shown in Supplementary Fig. 4.
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4

Cryopreserved PBMC Immune Profiling

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Cryopreserved PBMC from 3 HUU at birth were thawed and counted as described above. Cells were stimulated for 24h in complete RPMI+10% FBS with TLR cocktail in duplicate. BFA (5ug/mL) was added to one replicate at the beginning of the stimulation, or for the last 4 hours of culture to the second replicate. Cells were washed with PBS, stained with Zombie Yellow Fixable Viability dye and surface stained with HLA-DR Alexa Fluor 488, PD-L1 BV421, CD19 PerCP-Cy5.5, CD69 APC-Cy7 (Biolegend), CD56 PE, CD16 PE-CF594, CD14 PerCP-Cy5.5, CD20 PerCP-Cy5.5 and CD3 Alexa Fluor700 (BD Biosciences). Cells were washed and treated with BD lysing solution and BD permeabilization buffer 2 (BD Biosciences) then stained for IL-8 PE-Cy7 (Biolegend) and IFNγ APC (eBiosciences). Cells were washed and fixed with PBS+1% paraformaldehyde before acquisition on the cytometer (Beckman Coulter Gallios).
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5

Multiparametric Flow Cytometry of Murine and Human B-Cells

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Single‐cell suspensions were stained with a mixture of 5 to 6 fluorophores including and 7‐aminoactinomycin D (7‐AAD) for viability and acquired on the BD Verse flow cytometer with data analyzed using FlowJo software (BD Biosciences). Human B‐cell subsets were identified using the following antibodies: CD19‐APC, CD27‐BV510, CD38‐APC‐Cy7, CD24‐BV421, and IL‐10‐PE‐Cy7 (all from BioLegend). Mouse B‐cell subsets were identified using the following antibodies: B220‐PE, CD23‐APC, CD21‐PE‐Cy7, IgM‐BV421, CD138‐APC, CD86‐PE‐Cy7, CD69‐APC‐Cy7, and IL‐10‐APC‐Cy7 (all from BioLegend). Intracellular IL‐10 expression was detected as previously reported.33 Immunophenotype of human and murine B‐cell subsets analyzed are listed in Supplementary Table 1.
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6

Activation Kinetics of T Cell Subsets

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Cells were stained with Live/Dead Fixable Violet Dead Cell Stain Kit (Invitrogen), CD3-BV510, CCR7-PE, CD45RO-APC, CD4-PECy7, and CD27-BV785 (Biolegend). Activation levels were determined using CD25-APCCy7, CD69-APCCy7, and HLA-DR-APCCy7 (Biolegend). CFSE (Invitrogen) staining was done separately to prevent spillover. Stained cells were analyzed on the iQue Screener Plus (Intellicyt) at 4, 9, 14, and 21 days. Data was analyzed using FlowJo.
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7

Influenza Infection Dynamics in Lung Cells

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We used A549 cells, a transformed human cell line, in these studies as a proxy for lung alveolar epithelial cells. We maintain large stocks of A549 cells at low passage and verify that they are free from mycoplasma contamination routinely. A549 cells were seeded in 24-well plates and incubated for 24 h at 37 °C with 5% CO2. Confluent monolayers of A549 cells were infected with 0.5 MOI of pH1N1 and cells were incubated at 37 °C with 5% CO2 in the presence of 1 µg/mL of TPCK-trypsin. Mock-infected cells received infection media instead of virus. Mature BMdEos suspended in growth media supplemented with 10 ng/mL of IL-5 and 5 ng/mL of rmGM-CSF were added at 1:1 ratio to A549 cells directly or indirectly by using Transwell® permeable supports (0.4 µM permeable membrane) (Castor, Kennebunk, ME, USA). Plates were incubated for 3 days at 37 °C and 5% CO2 and cells were individually stained for flow cytometry. A549 cells were stained with anti-human HLA-A2 (PE-Cy7; Biolegend), CD40 (BV421; Biolegend), CD69 (A700; Biolegend), and influenza A PB1 (PE). Eosinophils were stained with anti-mouse MHC-I (PE-Cy7; Biolegend), CD80 (BV605; Biolegend), Siglec-F (PE-CF594, BD Biosciences), CD69 (APC-Cy7; Biolegend), and influenza A PB-1 (PE). Staining and acquisition were performed individually on each cell type with a BD LSR Fortessa and analyzed using FlowJo v10.5.2 (Treestar) software.
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8

Flow Cytometric Analysis of Immune Cell Subsets

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After stimulation, PBMCs, monocyte-depleted PBMCs or total leukocytes were washed twice in PBS before centrifugation at 1500 rpm for 5 min (RT) and stained for the following surface markers: CD45 (Alexa fluor 700, Biolegend) CD4 (FITC, Biolegend), CD8 (BV605, Biolegend), CD25 (BUV395, BD), CD69 (APC-Cy7, Biolegend) and live dead (aqua zombie, Biolegend) for 30 min at 4°C in FACS buffer. The staining of TNFR1 and TNFR2 on T cells and monocytes was conducted using the following antibodies: CD4 (FITC, Biolegend), CD8 (BV605, Biolegend), CD14 (BV711, Biolegend), CD16 (BUV735, BD), CD120a (APC, Biolegend), CD120b (PE, Biolegend). Antibodies to CD16 (BUV395, BD), CD11b (Pe-Cy7, Biolegend) and CD62L (APC-Cy7, Biolegend) were used to analyze the phenotype of neutrophils. After staining, the cells were washed twice in FACS buffer and re-suspended in 100 μL/well FACS buffer for analysis. Acquisition was performed using a BD Fortessa coupled to an HTS platform.
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9

Flow Cytometry Antibody Panel

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Antibodies used for flow cytometry were purchased from BioLegend (San Diego, CA) and include: anti‐CD4‐Alexa Fluor 700 (RPA‐T4), CD69‐APC/Cy7 (FN50), and CD25‐PE (M‐A251).
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10

Profiling Immune Cells by Flow Cytometry

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Monoclonal antibodies specific for human CD3-PeCy7, CD3-APC-Cy7 (Clone HIT3a), CD4-Alexa Fluor 488 (Clone OKT4), CD8-APC-Cy7, CD8-Brilliant Violet 421 (Clone RPA-T8), IgG1-PE (Clone HP6017), IgG1 Isotype-PE (Clone MOPC−21), 41BB-PE (Clone 4B4–1), PD−1-PeCy7, PD−1-Brilliant Violet 421 (Clone EH12.2H7), CD69-APC-Cy7 (Clone FN50), IFNγ-APC-Cy7 (Clone 4S.B3), TNFα-Alexa Fluor 488 (Clone Mab11), granzyme B-APC (Clone GB−11), perforin-PerCPCy5.5 (Clone B-D48), CEA-APC (Clone ASL−32), PD-L1-Brilliant Violet 421 (Clone 29E.2A3), TruStain fcX™ (Clone 93) and viability dye Zombie Aqua (ref 423,101), were purchased from Biolegend. Samples were analyzed in a FACSCanto II cytometer (BD Bioscience) and data were analyzed using FlowJo version X.0.7 (Tree Star, Inc.).
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