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7 protocols using phospho p38

1

Western Blot Analysis of Signaling Proteins

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Western blots were performed as previously described (64 ). Antibodies used for Western blotting were purchased from Cell Signaling Technology as follows: calnexin (C5C9), PKCα (2056), phospho-PKCα/β (Thr638/641, 9375), Talin-1 (C45F1), Phospho-Talin-1 (Ser425, D2P2M), p38 (D13E1), phospho-p38 (Thr180/Tyr182, D3F9), or β-Actin (Sigma, AC-74); all antibodies were used at a 1:1000 dilution. Horseradish peroxidase conjugate enzymes were stimulated with SuperSignal West Pico Chemiluminescent Substrate or Femto Maximum Sensitivity Substrate (Life Technologies). Blots were imaged using the ChemiDoc XRS Imager (Bio-Rad) and analyzed using ImageJ (National Institutes of Health) densitometry software.
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2

Comprehensive Analytical Reagent Sourcing

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All chemicals used in study were of analytical grade and were either procured from Indian manufacturer (SRL India, HiMedia chemicals) or obtained from Sigma Aldrich (St Louis, MO), Thermo Fisher Scientific Inc. (USA) etc. Roswell Park Memorial Institute (RPMI-1640) medium, High glucose Dulbecco’s Modified Eagle’s medium (DMEM), Eagle’s Minimum Essential Medium (EMEM), penicillin, streptomycin, blasticidin, trypsin, mannan, rotenone, antimycin A, bovine serum albumin (BSA), ethidium bromide, sodium pyruvate, uridine, protease and phosphatase inhibitor cocktails, REDTaq ReadyMix PCR reaction mix, antibodies (anti MnSOD, anti-SOD1, phospho JNK, phospho p38, anti rabbit/ mouse-HRP, anti β-actin-HRP) etc. were obtained from either Sigma Aldrich (St Louis, MO) or Cell Signaling technology, USA, whereas 3, 3’-DihexyloxacarbocyanineIodide [DiOC6 (3)], JC-1, 5-(and-6)-chlormethyl 2′,7’dichlorodihydrofluorescein diacetate acetyl ester [CM-H2DCFDA], 10-N-nony1–3, 6-bis [dimethylamino] acridine (NAO), Dihydroethidine (DHE), sulphorhodamine-B (SRB), fetal bovine serum (FBS), Keratinocyte-SFM (1X) were procured from Thermo Fisher Scientific Inc. (USA).
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3

Comprehensive Profiling of Inflammatory Markers

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Western blot analysis for IL-33 (Nessy-1 Enzo Life Science); Cit-H3 (Abcam), ST2, HMGB1, histone H2A 2B, histone H3, histone H4 (Abcam); histone H1 (Santa Cruz); β-actin (Sigma); phospho-p38, p38, phospho-JNK, JNK, ERK, phospho-ERK, p65, and phospho-p65 (Cell Signaling), were performed. Protein extraction and Western blot analysis were performed following a standard protocol as described [23 ].
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4

Western Blot Analysis of Signaling Proteins

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Western blots were performed as previously described (64 ). Antibodies used for Western blotting were purchased from Cell Signaling Technology as follows: calnexin (C5C9), PKCα (2056), phospho-PKCα/β (Thr638/641, 9375), Talin-1 (C45F1), Phospho-Talin-1 (Ser425, D2P2M), p38 (D13E1), phospho-p38 (Thr180/Tyr182, D3F9), or β-Actin (Sigma, AC-74); all antibodies were used at a 1:1000 dilution. Horseradish peroxidase conjugate enzymes were stimulated with SuperSignal West Pico Chemiluminescent Substrate or Femto Maximum Sensitivity Substrate (Life Technologies). Blots were imaged using the ChemiDoc XRS Imager (Bio-Rad) and analyzed using ImageJ (National Institutes of Health) densitometry software.
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5

Western Blot Analysis of Biomarkers

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A standard Western blotting protocol was used as described previously [5 (link),25 (link)] with antibodies against TGFβ (1:600), matrix metalloproteinase 2 (MMP2, 1:200) (Santa Cruz, CA, USA); connective tissue growth factor (CTGF, 1:500) (Biovision, Mountain View, CA, USA), LOX-1 (1:1000) (R&D System), bone morphogenetic protein-7 (BMP-7, 1:5000) (AbDSerotec, Minneapolis, MN, USA), nuclear factor-kappa B (NFκB, 1:1000), its inhibitor kappa B alpha (IκBα, 1:200), Phospho-P38 (1:1000) (Millipore, Billerica, MA, USA), NADP(H) oxidase subunit Gp91phox (1:500, BD Transduction Laboratories, France). Loading controls were β actin (1:3000, Sigma Aldrich, France) or P38 (1:1000, Millipore). Appropriate HRP-coupled secondary antibodies (1:5000 to 1:10 000, GE Healthcare, France) were used to detect the band by chemiluminescence with ECL plus (GE Healthcare, France). Intensities of the protein bands were determined and quantified using AlphaEase FC software (Alpha Innotech Corporation, San Leandro, CA).
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6

Luteolin Inhibits Inflammation Signaling

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Luteolin (≥98% purity by TLC), cell counting kit-8 assays (CCK-8), and DAPI solution were purchased from Sigma-Aldrich (St. Louis, MO, USA). Human recombinant proinflammatory cytokine IL-1β and enzyme-linked immunosorbent assay (ELISA) kits were purchased from R&D Systems (Minneapolis, MN, USA). The inhibitors PD98059, SP600125, SB202190, and Bay 117082 were purchased from Enzo Life Sciences (Farmingdale, NY, USA). Antibodies against β-actin, COX-2, iNOS, HO-1, AKT, and phosphorylated- (phospho-) AKT were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against JNK, ERK, p38, phospho-JNK, phospho-ERK, and phospho-p38 were purchased from Millipore (Billerica, MA, USA).
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7

Investigating Signaling Pathways in BMM-derived DCs

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To analyze the signaling transduction pathways, western immunoblotting was performed as previously described [42 (link)]. Briefly, the BMMCs were treated with different mTORi (rapamycin: 10 nM; everolimus: 10 nM; temsirolimus: 2 µM) or DMSO (control group) to generate immature BMM-derived DCs and then co-cultured with TC-1 tumor cells on day 6 for 6 h. All groups were lysed in PhosphoSafe™ Extraction Reagent (Novagen, Merck KGaA, Darmstadt, Germany) with a proteinase inhibitor (Sigma, Merck KGaA, Darmstadt, Germany). The protein extracts were quantified with a BCA Protein Assay Kit (Pierce, Rockford, IL, USA).
These targeting proteins were separated by SDS/PAGE (10% gel), transferred onto an PVDF membrane (Millipore, Merck KGaA), and probed with primary antibodies specific to mTOR (Genetex, Irvine, CA, USA), phospho-mTOR (Genetex), Bad (Genetex), Bak (Genetex), p38 (BioLegend), phospho-p38 (Millipore) and GAPDH (Abcam, Cambridge, MA, USA). Then, HRP-conjugated second antibodies (Hycult Biotech, Uden, The Netherlands) were probed and the specific bands were visualized by ECL® Western blotting system (GE Healthcare, Salt lake city, UT, USA). The band density was quantified with ImageJ and the relative ratios of the indicated proteins/GAPDH were shown.
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