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5 protocols using ccl 2

1

Comprehensive Gene Expression Analysis

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Total RNA was extracted with an Axyprep multisource RNA miniprep kit (Axygen, America), and cDNA was synthesized using TransScript First-Strand cDNA Synthesis SuperMix (TransGen Biotech, Beijing). Quantitative real-time PCR was performed using a SYBR Green kit (TransGen Biotech, Beijing) with a StepOnePlus real-time PCR system (ABI), and the primer sets used for MTTP, ApoA1, ApoB, ApoC2, CD31, TGFβ, TSP1, VEGFR1, IL-1β, TNFα, IL-6, IL-10, CCL2, PPARα, SIRT1, and β-actin (Sangon Biotech, Shanghai) are listed in Table 1. Relative gene expression was measured with triplicates for each sample and normalized to β-actin.
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2

Evaluating Inflammatory Markers in Bone Regeneration

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Complete Freund’s adjuvant (CFA) was obtained from Chondrex, Inc. (USA). D-luciferin was purchased from Abcam (UK). Rabbit anti-BMP3, anti-TNF-a, and anti-TIMP metallopeptidase inhibitor 1 (TIMP-1) antibodies were obtained from Abcam (UK). Rabbit anti-MMP-3 and anti-MMP-9 antibodies were acquired from Merck Millipore (USA). Rabbit anti-IL-6, anti-IL-1β, and anti-IL-17A were purchased from Bioworld (USA). The rat anti-β-actin antibody was purchased from CST (USA). A horseradish peroxidase (HRP)-labeled goat anti-rabbit immunoglobulin (IgG) was procured from Zhongshan Biotechnology Corporation (China). BMP3, MMP-3, MMP-9, TIMP-1, TNF-a, IL-6, IL-1β, IL-17A, CCL-2, CCL-3, VCAM-1, and β-actin primers were synthesized by the Shanghai Sangon Biological and Technological Company (China).
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3

Investigating PTEN Regulation and Epigenetics

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Bpv (PTEN) and 5-Aza-2 0 -deoxycytidine were obtained from Sigma Inc. (St. Louis, MO, USA). Complete Freund's adjuvant was purchased from Chondrex, Inc. (WA, USA). Rabbit anti-PTEN and anti-TNF-a monoclonal antibody were obtained from Abcam (Cambridge, UK). Rabbit anti-DNMT1 and anti-Vimentin (Alexa Fluor 594 Conjugated) were acquired from Cell Signaling Technology (Danvers, MA, USA). Rabbit anti-IL-6 and anti-b-actin monoclonal antibody were purchased from Bioworld (Shanghai, China). Peroxidase-conjugated goat antirabbit IgG (H þ L) was obtained from ZSGB-BIO (Beijing, China). PTEN, TNF-a, IL-6, IL-1b, CCL-2, CCL-3, VCAM-1, and VEGF-a and b-actin primers were obtained from Sangon Biotech (Shanghai) Co., Ltd (Shanghai, China).
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Quantifying Drug-Induced Gene Expression

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Four primers, CCL2, CXCL8, CXCL10, and PTGS2, were purchased from Sangon Biotech Corporation (Shanghai, China). The sequence details are listed in Table S1. HCT116 cells were intervened with the above 3 drugs at a concentration of 20 µM for 48 hours. After that, the cells were collected, and RNA was extracted using the TRIzol method. After the purity and integrity of the RNA had been determined, cDNA was prepared through reverse transcription. The PCR conditions were the following: pre-denaturation at 95 °C for 1 minute; denaturation at 95 °C for 15 seconds, annealing at 58 °C for 20 seconds, extension at 72 °C for 20 seconds, for 40 cycles; then, extension at 72 °C for 5 minutes to terminate the reaction. After the completion of real-time quantitative PCR (RT-qPCR), the reliability of the melting curve and amplification curve results obtained by PCR was quantitatively analyzed, and the cycle threshold (Ct) was set. The ratios of CCL2, CXCL8, CXCL10, PTGS2 and the internal control, β-actin, were used to represent their relative expression levels, and the relative mRNA expression intensity of each was calculated. There were three duplicate holes in each group, and the test was repeated 3 times.
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5

PTEN and 5-Aza Modulate Inflammatory Response

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Bpv (PTEN) and 5-Aza-2′-deoxycytidine (5-Aza) were purchased from Sigma-Aldrich, Inc. (St. Louis, MO). Complete Freund's adjuvant was obtained from Chondrex, Inc. (Redmond, WA). Rabbit anti-PTEN, anti-TIMP metallopeptidase inhibitor 1 (TIMP-1), anti-TNF-α antibody and mouse anti-DNA methyltransferase 1(DNMT1) monoclonal antibody were purchased from Abcam (Cambridge, UK). Rabbit anti-IL-1β, anti-IL-6 and anti-IL-17A, and mouse anti-β-actin monoclonal antibody were obtained from Bioworld (Shanghai, China). Rabbit anti-MMP-3, anti-MMP-9, anti-AKT and anti-p-AKT antibody, and Simple ChIP ® Enzymatic Chromatin IP Kit (Magnetic Beads) were purchased from Cell Signaling Technology (Danvers, MA). Peroxidase-Conjugated Goat anti-Rabbit IgG (H+L) were purchased from ZSGB-BIO (Beijing, China). The primers of PTEN, IL-1β, IL-6, IL-17A, IL-8, IL-10, MMP-3, MMP-9, TIMP-1, CCL-2, CCL-3, CCL-8 and β-actin were synthesized by Sangon Biotech Co., Ltd (Shanghai, China).
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