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9 protocols using ripa buffer

1

Probing KEAP1-MCB-613 Interactions

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293FT cells were transfected with HA Clover KEAP1 WT as described above. After 48 hours, the cells were washed once in ice-cold PBS and collected in ice-cold RIPA buffer (Sigma). The cells were incubated on ice for 30 minutes with intermittent vortexing, and the resultant lysates subjected to centrifugation at 10,000 rpm for 10 minutes at 4 °C. A fraction of the supernatant was reserved for input and prepared for western blotting as described above. The remaining supernatant was exposed to GFP-Trap agarose beads (Proteintech) and rotated end-over-end at 4 °C overnight before washing 5 times with ice-cold RIPA buffer. The beads were then equilibrated in room-temperature binding buffer (25 mM Tris (pH 7.5), 100 mM NaCl, 0.1% NP-40, 1 mM DTT, 5% glycerol). 10 μg of purified His6-KEAP1 was added and the samples were rotated end-over-end at room temperature for 15 minutes. MCB-613 (2, 20, or 200 μM) was added and the samples were rotated for another 15 minutes. Samples were washed 3 times in room-temperature binding buffer, re-suspended in 80 μl of NuPAGE LDS Sample Buffer (4X), boiled at 95 °C for 5 minutes, and analyzed by western blot. Targets were detected using anti-GFP (#2555, CST) and anti-His (#2365, CST) primary antibodies.
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2

Apoptosis Pathway Protein Assay

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Bax, Bcl-2, cleaved caspase-3, cdk6, cytochrome c, cyclin D1, cyclin E1, GAPDH, IκB-α, NF-κB/p65, p21, secondary antibodies, and RIPA buffer were from Proteintech (Wuhan, China). Phospho-IκB-α (Ser 32) primary antibody was purchased from Cell Signaling Technology (Cell Signaling Technology, CST, Beverly, MA, USA). The Annexin-V/PI Kit, mitochondrial membrane potential kit, Hoechst 33258 assay kit, DNA fragmentation kit, and Caspase-3, -8, and -9 kits were purchased from keyGEN BioTECH (Nanjing, China). The nuclear and cytosolic protein extraction kit was purchased from Beyotime (Nanjing, China). The qRT-PCR kit was purchased from Transgene (Shenzhen, China). All other reagents and chemicals were purchased from standard commercial sources.
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3

Western Blot Analysis of Apoptosis Markers

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Spinal cords were homogenized and CD4+ T cells were lysed with cold RIPA buffer (Proteintech, IL, USA) supplemented with a protease inhibitor cocktail (Sigma). After centrifugation at 4 °C for 15 min, the supernatants were collected and used for western blot analysis. The following antibodies were used: anti-Bax (1:1,000, Proteintech, IL, USA), anti-MBP (1:1,000, Proteintech), anti-cleaved Caspase 3 (1:1,000, Affinity, OH, USA), anti-cleaved Caspase 9 (1:1,000, Affinity), anti-Bcl-2 (1:1,000, Proteintech), anti-cleaved PARP (1:1,000, Affinity), and anti-β-actin (1:5,000, Bioworld, MN, USA).
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4

Quantitative PKACα Protein Assay

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PKACα ELISA kit was obtained from Cloud-Clone-Corp (Katy, TX, USA). RIPA buffer was from Proteintech (Rosemont, IL, USA). Antibodies against PKACα and β-actin were purchased from Cell Signaling Technology (Danvers, MA, USA). Electrochemiluminescence (ECL) reagents were purchased from Millipore (Billerica, MA, USA).
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5

Quantitative Western Blot Analysis

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After being treated with OSW-1 for 24 h, proteins were extracted from total cellular lysates using RIPA buffer (Proteintech, Wuhan, China), and the protein contents were quantified with a BCA protein assay kit (Elabscience, Wuhan, China). The protein samples were electrophoresed on a 10% SDS-PAGE gel (Severbio, Beijing, China) and electrotransferred to PVDF membranes (Millipore, MA, United States). The membranes were blocked at room temperature for 30 min and subsequently incubated with primary antibodies at 4 °C overnight. Then, secondary antibodies were added, and the immunoreactive bands were observed using enhanced chemiluminescence. The western blot bands were evaluated using ImageJ software.
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6

Western Blot Analysis of Spinal Cord

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Spinal cords were homogenized and CD4 + T cells were lysed with cold RIPA buffer (Proteintech, IL, USA) supplemented with a protease inhibitor cocktail (Sigma). After centrifugation at 4 °C for 15 min, the supernatants were collected and used for western blot analysis. The following antibodies were used: anti-Bax (1:1,000, Proteintech, IL, USA), anti-MBP (1:1,000, Proteintech), anti-cleaved Caspase 3 (1:1,000, A nity, OH, USA), anti-cleaved Caspase 9 (1:1,000, A nity), anti-Bcl-2 (1:1,000, Proteintech), anti-cleaved PARP (1:1,000, A nity), and anti-β-actin (1:5,000, Bioworld, MN, USA).
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7

Spinal Cord Protein Expression Analysis

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Spinal cords were homogenized and CD4 + T cells were lysed with cold RIPA buffer (Proteintech, IL, USA) supplemented with a protease inhibitor cocktail (Sigma). After centrifugation at 4 °C for 15 min, the supernatants were collected and used for western blot analysis. The following antibodies were used: anti-Bax (1:1000, Proteintech, IL, USA), anti-MBP (1:1000, Proteintech), anti-cleaved Caspase 3 (1:1000, A nity, OH, USA), anti-cleaved Caspase 9 (1:1000, A nity), anti-Bcl-2 (1:1000, Proteintech), anti-cleaved PARP (1:1000, A nity), anti-β-actin (1:5000, Bioworld, MN, USA).
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8

Western Blot Analysis of Spinal Cord Proteins

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Spinal cords were homogenized and CD4 + T cells were lysed with cold RIPA buffer (Proteintech, IL, USA) supplemented with a protease inhibitor cocktail (Sigma). After centrifugation at 4 °C for 15 min, the supernatants were collected and used for western blot analysis. The following antibodies were used: anti-Bax (1:1,000, Proteintech, IL, USA), anti-MBP (1:1,000, Proteintech), anti-cleaved Caspase 3 (1:1,000, A nity, OH, USA), anti-cleaved Caspase 9 (1:1,000, A nity), anti-Bcl-2 (1:1,000, Proteintech), anti-cleaved PARP (1:1,000, A nity), anti-β-actin (1:5,000, Bioworld, MN, USA).
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9

Western Blot Protein Analysis Protocol

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For western blot assay, cells were lysed by using RIPA buffer (Proteintech, China) with added 1% protease inhibitor cocktail (Sigma, USA). The total protein content of the lysate was determined by the BCA method. The proteins were separated through SDS-PAGE and transferred onto polyvinylidenedi uoride (PVDF) membranes (Millipore, USA). The membranes were blocked by using a 4 % solution of BSA for 2 h followed by incubation with primary antibody (1:500) overnight at 4 °C in dark. Then, the membranes were incubated with secondary antibody (1;1000) for 2 h at room temperature and protein bands were visualized by ECL assay kit (Bio-Rad, USA) and the band densities were compared using ImageJ software.
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