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8 protocols using heparan sulfate from bovine kidney

1

Characterization of Lamprey AGTR1 Receptor

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Human thrombin (≥2 800 NIH U/ml), human plasmin, human leukocyte cathepsin G, trypsin and α-chymotrypsin from bovine pancreas, affinity-isolated anti-hemagglutinin (HA) antibodies from rabbits and heparan sulfate from bovine kidney were purchased from Sigma-Aldrich. Human FXa (176 IU/mg) was from Enzyme Research Laboratories. Horse anti-mouse IgG and Q5 high-fidelity DNA polymerase (2 000 U/ml) were from New England BioLabs. Horseradish peroxidase-linked anti-rabbit antibodies from donkey and IMAC Sepharose 6 Fast Flow were purchased from GE Healthcare. The FXa substrate S-2222 was from Chromogenix. PCR primers (Table S1) and codon-optimized lamprey AGTR1 DNA fused to EGFP were obtained from Life Technologies GmbH, Darmstadt, Germany. Tetramethylrhodamine-labeled lamprey angiotensin II (TMR-EEDYDERPYMQPF; TMR-angiotensin II for short) was delivered from GenScript Inc., Piscataway, USA.
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2

Heparan Sulfate Binding Assay for Complement Regulators

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HSGlx was immobilized on microtiter plates (NUNC, Roskilde, Denmark) at a concentration which resulted in ~70% of the EW4G2 (anti-HS antibody) signal obtained from 1.0 µg/well of heparan sulfate from bovine kidney (Sigma-Aldrich). Plates were washed using PBS/0.05% Tween-20 and blocked using 2% BSA in HBSS for 2 hours at RT. Binding of FH, FHR1, FHR2 and FHR5 after 1 hour incubation at RT was determined as described for cell surface binding assays. For competition between FH and FHRs, plates were preincubated with FHR1 or FHR5 in 2% BSA in HBSS for 1 hour at RT before incubation with FH. The role of HS modifications was evaluated by preincubating FH, FHR1 and FHR5 with 100 µg/ml heparin, N-, 2-O- and 6-O-desulfated heparin (Iduron, UK) for 1 hour at RT before addition to immobilized HSGlx. To determine the minimum oligosaccharide size required for inhibition of FHR1 and FHR5 binding to HSGlx, proteins were preincubated with 10 µM of the different size exclusion chromatography fractions.
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3

Cartilage GAGs Identification via Gel Electrophoresis

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Horizontal gel electrophoresis was performed with GAGs isolated from cartilage and standards GAGs to assure their identities. Solutions of 1 mg/mL of each standard were prepared using hyaluronic acid sodium salt from human umbilical cord (Sigma- Aldrich), keratansulfate sodium salt from bovine cornea (Sigma- Aldrich), chondroitin 4-sulfate (CSA) sodium salt from whale cartilage (Seikagaku), chondroitin 6-sulfate (CSC) sodium salt from shark cartilage (Seikagaku), dermatan sulfate (CSB) sodium salt from pig skin (Seikagaku), heparansulfate from bovine kidney (Sigma-Aldrich).
Total GAGs extracted from cartilage (2 μg) and standards GAGs (7 μg) were applied to a 4% agarose gel in TAE 1x. After 40 min at 20 V and 4 h at 40 V, the gel was fixed and stained with 0.005% Stains-All (Sigma-Aldrich) for an overnight incubation in the dark. Then the gel was plated in distilled water in the dark for two days to remove the dye excess.
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4

Heparan Sulfate Binding Assay

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Heparan sulfate-binding assay was performed as described before [54] with some modifications. Briefly, Maxisorp flatbottom 96-well microplates (Jet Biofil, Guangzhou, China) were coated with 100 µl/well of 10 µg/ml (diluted in water) of heparan sulfate from bovine kidney (Sigma-Aldrich Co.), and the control wells were incubated with 100 µl of 10 µg BSA/ml, and all plates were incubated at 37 °C overnight. Next, the plates were washed with 0.05% Tween-20 (Sigma-Aldrich Co.) in PBS (PBS-T) and then were blocked with a 1% bovine serum albumin (BSA) in PBS at room temperature (RT) for an hour. After washing steps, the plates were incubated with the different concentrations of rPvTRAP antigen (starting at 60-0.625 µg/ml) in PBS at RT for 2 h. After washing with PBS-T, the binding of rPvTRAP to heparan sulfate was detected by the addition of 100 µl mouse polyclonal antibodies against rPvTRAP (obtained 38 days after the first immunization) for 2 h, followed by goat anti-mouse IgG-horseradish peroxidase (HRP) conjugate (1:25,000; Sigma-Aldrich Co.) at RT for an hour. The reaction was developed using o-phenylenediamine/H 2 O 2 (OPD, Sigma-Aldrich Co.), as a substrate, and stopped with 2N H 2 SO 4 . The optical density (OD) at 490 nm was read using a microplate reader (BioTek, Winooski, VT, USA).
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5

Recombinant Cytokines and Glycosaminoglycans

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Recombinant human cytokines used in this study (CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL4L1, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL17, CCL18, CCL19, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CXCL1, CXCL2, CXCL3, CXCL4, CXCL5, CXCL6, CXCL7, CXCL8, CXCL9, CXCL10, CXCL11, CXCL12α, CXCL12β, CXCL13, CXCL14, CXCL16, XCL1, CX3CL1, IL-1α, IL-1β, IL-6, IL-6Rα, IL-10, IL-12p70, IL-13, IL-17a, IL-18BP-Fc, IL-23, IL-27, IL-35, TNF-α, TNF-β, IFN-β, IFN-γ, IFN-λ1, IFN-ω) from PeproTech, and (IFN-α2 and IL-18) from Sino Biological, were reconstituted in DPBS 0.1% BSA at 10 μM, aliquoted and stored at −80° C. Heparin (# 2106), heparan sulfate from bovine kidney (# H7640), chondroitin sulphate A (# C9819) and chondroitin sulphate B (# C3788) were obtained from MilliporeSigma. Heparan sulfate from porcine mucosa (# AMS.GAG-HS01) and keratan sulfate (# AMS.CSR-NAKPS2-SHC-1) were purchased from ASMBIO. We assumed an average molecular weight of 30 kDa for heparan sulfate from porcine mucosa and 15 kDa for Heparin36 .
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6

Cytokine and Glycosaminoglycan Protocols

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Recombinant human CKs used in this study (CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL4L1, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL17, CCL18, CCL19, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CXCL1, CXCL2, CXCL3, CXCL4, CXCL5, CXCL6, CXCL7, CXCL8, CXCL9, CXCL10, CXCL11, CXCL12α, CXCL12β, CXCL13, CXCL14, CXCL16, XCL1, CX3CL1, IL-1α, IL-1β, IL-6, IL-6Rα, IL-10, IL-12p70, IL-13, IL-17a, IL-18BP-Fc, IL-23, IL-27, IL-35, TNF-α, TNF-β, IFN-β, IFN-γ, IFN-λ1, IFN-ω) from PeproTech, and (IFN-α2 and IL-18) from Sino Biological, were reconstituted in DPBS 0.1% BSA at 10 µM, aliquoted and stored at −80 °C. Heparin (# 2106), heparan sulfate from bovine kidney (# H7640), chondroitin sulfate A (# C9819), and chondroitin sulfate B (# C3788) were obtained from MilliporeSigma. Heparan sulfate from porcine mucosa (# AMS.GAG-HS01) and keratan sulfate (# AMS.CSR-NAKPS2-SHC-1) were purchased from ASMBIO. We assumed an average molecular weight of 30 kDa for heparan sulfate from porcine mucosa and 15 kDa for heparin (68 ).
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7

Cytokine and Glycosaminoglycan Characterization

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Recombinant human cytokines used in this study (CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL4L1, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL17, CCL18, CCL19, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CXCL1, CXCL2, CXCL3, CXCL4, CXCL5, CXCL6, CXCL7, CXCL8, CXCL9, CXCL10, CXCL11, CXCL12α, CXCL12β, CXCL13, CXCL14, CXCL16, XCL1, CX3CL1, IL-1α, IL-1β, IL-6, IL- 6Rα, IL-10, IL-12p70, IL-13, IL-17a, IL-18BP-Fc, IL-23, IL-27, IL-35, TNF-α, TNF-β, IFN-β, IFN-γ, IFN-λ1, IFN-ω) from PeproTech, and (IFN-α2 and IL-18) from Sino Biological, were reconstituted in DPBS 0.1% BSA at 10 µM, aliquoted and stored at −80° C. Heparin (# 2106), heparan sulfate from bovine kidney (# H7640), chondroitin sulphate A (# C9819) and chondroitin sulphate B (# C3788) were obtained from MilliporeSigma. Heparan sulfate from porcine mucosa (# AMS.GAG-HS01) and keratan sulfate (# AMS.CSR-NAKPS2-SHC-1) were purchased from ASMBIO. We assumed an average molecular weight of 30 kDa for heparan sulfate from porcine mucosa and 15 kDa for Heparin 36 .
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8

Cytokine Reconstitution and Characterization

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Recombinant human CKs used in this study (CCL1, CCL2, CCL3, CCL3L1, CCL4, CCL4L1, CCL5, CCL7, CCL8, CCL11, CCL13, CCL14, CCL15, CCL16, CCL17, CCL18, CCL19, CCL20, CCL21, CCL22, CCL23, CCL24, CCL25, CCL26, CCL27, CCL28, CXCL1, CXCL2, CXCL3, CXCL4, CXCL5, CXCL6, CXCL7, CXCL8, CXCL9, CXCL10, CXCL11, CXCL12α, CXCL12β, CXCL13, CXCL14, CXCL16, XCL1, CX3CL1, IL-1α, IL-1β, IL-6, IL-6Rα, IL-10, IL-12p70, IL-13, IL-17a, IL-18BP-Fc, IL-23, IL-27, IL-35, TNF-α, TNF-β, IFN-β, IFN-γ, IFN-λ1, IFN-ω) from PeproTech, and (IFN-α2 and IL-18) from Sino Biological, were reconstituted in DPBS 0.1% BSA at 10 μM, aliquoted and stored at −80° C. Heparin (# 2106), heparan sulfate from bovine kidney (# H7640), chondroitin sulphate A (# C9819) and chondroitin sulphate B (# C3788) were obtained from MilliporeSigma. Heparan sulfate from porcine mucosa (# AMS.GAG-HS01) and keratan sulfate (# AMS.CSR-NAKPS2-SHC-1) were purchased from ASMBIO. We assumed an average molecular weight of 30 kDa for heparan sulfate from porcine mucosa and 15 kDa for Heparin (65 ).
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