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3 protocols using beclin 1 3495 s

1

Autophagy, Apoptosis, and Oxidative Stress

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Primary antibodies recognizing LC3B (#3868), P62 (#8025), ATG5 (#4445), ATG7 (#4445), BCL-2 (#15071), BAX (#5023), cleaved-caspase 9 (#7237), beclin-1 (#3495 S) and HO-1 (#43966) as well as the secondary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibody NRF2 (sc-365,949) was purchased from Santa Cruz (Dallas, TX, USA). Beclin-1-shRNA and negative control shRNA (NC-shRNA) vectors were purchased from GenePharma Co., Ltd. (Shanghai, China). Sulforaphane (HY-13755), chloroquine (HY-17589), Z-VAD-FMK (HY-16658 B) and NRF2 inhibitor ML385 (HY-100523) were purchased from MedChemExpress (Monmouth Junction, NJ, USA).
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2

Western Blot Analysis of Autophagy Markers

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Whole cell lysates were prepared with RIPA buffer supplemented with protease and phosphatase inhibitor cocktails (B14012, Bimake, USA). Protein concentrations were determined using the BCA protein assay (23229, Thermo Fisher Scientific, USA). Equal amounts of proteins were subjected to SDS-polyacrylamide gel electrophoresis and then transferred to the appropriate PVDF membranes (0.22 µm: ISEQ00010; 0.45 µm: IPVH00010, Millipore, USA). The membranes were blocked with 5% nonfat dry milk at room temperature for 1 h and then incubated overnight at 4 °C with primary antibodies against Caveolin-1(16447-1-AP, Proteintech, USA), LC3 A/B (4108S, Cell Signaling Technology, USA), Beclin-1 (3495S, Cell Signaling Technology, USA), IRGM (AP11128b, Abgent, USA), p62 (sc-28359, Santa, USA) and β-actin (sc-58673, Santa, USA). Protein bands were visualized through Immobilon Western chemiluminescent reagents (WBKLS0500, Millipore, USA).
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3

Gallic Acid and Metformin Cytotoxicity Assessment

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Gallic acid, 98% purity, was purchased from Sigma-Aldrich (St. Louis, Missouri, United States) and dissolved in phosphate-buffered saline (PBS) at a concentration of 3 mg/mL at 40 °C. Metformin (1,1-Dimethylbiguanide hydrochloride; 98% purity) was purchased from Exir Pharmaceutical Company (Iran) and dissolved in PBS 1 M. 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) powder, 2-7 dichlorofluorescein diacetate (DCFH-DA), and propidium iodide (PI) were procured from Sigma-Aldrich (St. Louis, Missouri, United States). RNase A was purchased from Yekta Tajhiz Azma, Iran. Antibodies against LC3-B (3868S), P62 (88588S), and Beclin-1 (3495S) were obtained from Cell Signaling Technology (CST; Danvers, Massachusetts, United States), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH; sc-47724) were obtained from Santa Cruz Biotechnology (California, USA). BMG Spectro Nano Elisa Reader (Germany) and BD FACSCalibur (USA) flow cytometers were also used.
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