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Sybr green rt pcr kit

Manufactured by Takara Bio
Sourced in Japan, China, United States, Switzerland, United Kingdom

The SYBR Green RT-PCR Kit is a reagent kit designed for real-time reverse transcription polymerase chain reaction (RT-PCR) analysis. The kit includes all the necessary components to perform sensitive and specific RNA detection and quantification, utilizing the SYBR Green fluorescent dye technology.

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122 protocols using sybr green rt pcr kit

1

RNA Extraction and qPCR Analysis

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TRIzol reagent (Invitrogen, USA) was used to extract total RNA from the cells, and the cDNA synthesis kit (Takara, Japan) was used to reverse-transcribe the extracted total RNA into cDNA in accordance with the kit’s instructions. SYBR Green RT-PCR Kits (Takara, Japan) were used for the qPCR, and 2−ΔΔCt was used to determine the relative mRNA expression. β-actin provided internal control. Table 1 contained a list of the primers.
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2

Quantitative Gene Expression Analysis

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Total RNA was extracted from cells utilizing RNeasy kits (Beyotime, China) and reverse transcribed with one-step RT-PCR kits (Beyotime, China) at 37°C lasting 30 min, in accordance with the manufacturer’s protocols. qPCR was conducted utilizing SYBR Green RT-PCR kits (Takara, China). The thermocycling conditions were as follows: 95°C lasting 5 min; 40 cycles of 95°C lasting 40 s, 60°C lasting 30 s, and 72°C lasting 30 s. The following primers were used for PCR: AKR1B1: 5′-TTT​TCC​CAT​TGG​ATG​AGT​CGG-3′ (forward), 5′-CCT​GGA​GAT​GGT​TGA​AGT​TGG-3′ (reverse); CPVL: 5′-TGG​AAG​GTG​ATT​GTT​TCG​CTG-3′ (forward), 5′-GTC​TCC​CTT​AGG​TGG​CAT​GGA-3′ (reverse); CTSL: 5′- CTT​TTG​CCT​GGG​AAT​TGC​CTC -3′ (forward), 5′-CAT​CGC​CTT​CCA​CTT​GGT​C-3′ (reverse); and GAPDH: 5′-GGA​GCG​AGA​TCC​CTC​CAA​AAT-3′ (forward), 5′-GGC​TGT​TGT​CAT​ACT​TCT​CAT​GG-3′ (reverse). The fold change in mRNA expressions was determined with the 2−ΔΔCq method.
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3

DAB2IP Expression Analysis by qPCR

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Total RNA was exacted using TRIzol reagent (Thermo Fisher Scientific) following the manufacturer’s instruction. q-PCR was performed on ABI 7500 Fast Real-Time PCR (RT-PCR) System (Applied Biosystems, Waltham, MA, UK) with SYBR Green RT-PCR kits (TaKaRa). The expression of DAB2IP was normalized to that of human 18s. The primer sequences used in the study were: human-DAB2IP-Forward, 5ʹ-CTG AGC GGG ATA AGT GGA TGG-3ʹ, human-DAB2IP-Reverse, 5ʹ-AAA CAT TGT CCG TCT TGA GCTT-3ʹ, human-18s-Forward, 5ʹ-GTA ACC CGT TGA ACC CCATT-3ʹ, human-18s-Reverse, 5ʹ-CCA TCC AAT CGG TAG TAGCG-3ʹ.
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4

Quantification of miR-137 and AMPKα1 in HUVECs

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Total RNA of HUVECs was isolated by Trizol reagent (Invitrogen, USA) following the manufacturer's protocol. For quantification of miR-137, the TaqMan MicroRNA Reverse Transcription Kit and TaqMan miRNA assay (Applied Biosystems, Foster City, CA, USA) were used to perform reverse transcription and PCR according to the manufacturer's instructions. U6 small nuclear RNA was used as the internal control. The SYBR Green RT-PCR kits (TAKARA, Japan) were used to perform the qRT-PCR analyses for mRNA of AMPKα1. AMPKα1 expression was normalized to GAPDH. The following primers were used: miR-137 forward, 5'-GCG CTT ATT GCT TAA GAA TAC-3', reverse, 5'-CAG TGC AGG GTC CGA GGT-3'; AMPKα1 forward, 5'-CTC ACCT CCT CCA AGT TATT-3', reverse, 5'-TCA GAT GGG CTT ATA CAGC-3'; U6 forward, 5'-CTC GCT TCG GCA GCACA-3', reverse, 5'-AAC GCT TCA CGA ATT TGCGT-3'; GAPDH forward, 5'-TCA ACG ACC ACT TTG TCA AGC TCA-3', reverse, 5'-GCT GGT GGT CCA GGG GTC TTACT-3'. Each sample was assessed in triplicate.
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5

RNA Extraction and RT-qPCR Analysis Protocol

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Total RNA was extracted from cells using RNeasy Kits, according to the protocol provided by the manufacturer (QIAGEN, Hilden, Germany). The superscript III first‐strand synthesis kit (TaKaRa) was used to synthesize complementary DNA (cDNA) from total RNA. Then, RT-qPCR was performed on the ABI Prism 7900 Sequence Detection System (PE Applied Biosystems, Foster City, CA, USA) using a SYBR Green RT-PCR kit (TaKaRa). Expression levels were normalized to expression of the housekeeping gene glyceraldehyde-3-phosphate dehydrogenase (GAPDH).
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6

Quantitative RT-PCR Analysis of Hypoxia-Responsive Genes

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Trizol reagent was added to extract the total RNA of HUVEC inoculated on H-M-R. Immediately, the extracted mRNA was used to synthesize cDNA by Prime Script RT Kit (Takara, Japan). Then, SYBR Green RT-PCR Kit (Takara, Japan) was used for RT-PCR. The experiment was repeated three times and the primer sequences were as follows:
Hif-1α: Forward CCATGTGACCATGAGGAAAT
Reverse CGGCTAGTTAGGGTACACTT
VEGF: Forward TGCGGATCAAACCTCACCA
Reverse CAGGGATTTTTCTTGTCTTGCT
Gapdh: Forward ACAACTTTGGTATCGTGGAAGG
Reverse GCCATCACGCCACAGTTTC
The samples were repeated three times.
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7

Quantitative Analysis of miR-let-7i and Bcl-2 Transcripts

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Total RNA was isolated using TRIzol reagent (Invitrogen, United States) according to the manufacturer’s instruction. For miR-let-7i detection, cDNA was synthesized using One Step PrimeScript miRNA cDNA Synthesis Kit (TaKaRa, China). For Bcl-2 detection, cDNA was synthesized using PrimeScript RT Reagent Kit (TaKaRa, China). The mRNA expression levels were detected with SYBR Green RT-PCR Kit (Takara Bio, Japan). Then, the qRT-PCR analysis was performed in triplicate on an ABI 7500 Fast Real-Time PCR System (Applied Biosystems, United States), using small nuclear RNA U6 and GAPDH as the endogenous control for miR-let-7i and Bcl-2, respectively. Data were calculated by the comparative cycle threshold (CT) (2–ΔΔCT) method. The PCR primer sequences were as follows.
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8

Analyzing Relative mRNA Expression

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Total RNA was extracted from the cells with TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's instructions. The relative expression levels of the mRNAs were determined by real-time RT-qPCR using a standard SYBR Green RT-PCR Kit (Takara Bio, Inc., Otsu, Japan). The specific primer pairs used in this study are listed in Table I. Averages of the Ct values from duplicate measurements were obtained. The relative expression levels of mRNAs were quantified using GraphPad Prism v5.0 software (GraphPad Software, Inc., San Diego, CA, USA) and the 2−ΔΔCt method.
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9

RNA Extraction and qPCR Analysis

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TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) was used to extract total RNA from the H9C2 cells according to the manufacturer's instructions. Total RNA was then reverse transcribed to cDNA using a PrimeScript RT Reagent kit (Takara Biotechnology, Co., Ltd.; cat. no. RR047A). qPCR was then performed using a SYBR Green RT-PCR Kit (Takara Biotechnology, Co., Ltd.). The PCR conditions were as follows: 40 cycles of 95°C for 30 sec, 60°C for 34 sec and 72°C for 30 sec. U6 (Takara Biotechnology, Co., Ltd.; cat. no. 638315) and β-actin served as the internal controls. The U6 was used for miRNA, and mRNA and lncRNA was normalization by β-actin. The relative expression levels of lncRNA SNHG8, miR-335 and RASA1 expression were assessed using the comparative 2−ΔΔCq method (25 (link)) and primer sequences are presented in Table II and Table SI.
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10

Quantitative Analysis of miR-107 and NF1 mRNA

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Total RNA was isolated from cell lysates according to the instructions provided by the manufacturer of TRIZOL (Invitrogen, CA, USA). Reverse transcription was performed using the TaqMan MicroRNA Reverse Transcription Kit (ABI, CA, USA). The expression level of miR-107 was assessed using the specific TaqMan MicroRNA Assay kit (ABI, CA, USA), and normalized to U6. To determine the expression levels of NF1 mRNA, the cDNA was amplified by real-time PCR with SYBR Green RT-PCR kit (Takara, Japan). The expression of GAPDH was used as an internal control. The following primers were used for amplification: 5′- CGAATGGCACCGAGTCTT AC-3′ (F) and 5′-GACCAGTTGGACGAGCCC -3′ (R) for NF1; 5′- GCACCGTCA AGGCTGAGAAC -3′ (F) and 5′- TGGTGAAGACGCCAGTGGA -3′ (R) for GAPDH. Real-time PCR was performed in triplicate on ABI 7900HT Real-Time PCR System (ABI, CA, USA). Relative expression was calculated using the comparative Ct method. The Real-time PCR assay was performed with three biological replicates and three technical replicates.
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