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73 protocols using powerpac basic

1

Western Blot Analysis of SCC Cells

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The treatment method of SCC cells was similar to the method described in section Inhibitory effect on cancer cells under UVA radiation. After incubation for 24 h, cells were lysed in RIPA lysis buffer. To determine the various proteins, cell lysates were prepared using extraction with SDS lysis buffer in the presence of 1 mM phenylmethylsulfonyl fluoride (PMSF). The protein concentration was measured by a BCA protein assay kit (P0010, Beyotime, Shanghai, China), and 10 μg protein per lane was separated by SDS-PAGE on an electrophoresis apparatus (PowerPacTM Basic, Bio-rad, California, USA) and transferred to polyvinylidene difluoride membranes. After transfer, membranes were blocked with 5% nonfat milk in Tris-buffered saline tween (TBST, T1086, Solarbio, Beijing, China) for 2 h at room temperature and incubated with respective primary antibodies (Nrf2, HO-1, GSTP1, NQO1, NF-κB, GAPDH) overnight at 4°C. Membranes were washed three times with 1×TBST and incubated with horseradish peroxidase-conjugated secondary antibodies. The electrophoresis instrument was purchased from Bio-rad (PowerPacTM Basic, California, USA). Signals were recorded by ECL reagent (#34095, Thermo Scientific, Massachusetts, USA) and visualized by AZURE Biosystems (c300, California, USA).
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2

PCR Confirmation of Brucella melitensis

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The bacterial colonies and DNA extracts were used as templates for confirmation of B. melitensis using the forward P1 (5’-CATGCGCTATGTCTGGTTAC-3′) and P2 (5’-AGTGTTTCGGCTCAGAATAATC-3′) primer sequences that amplified the fragment at 252 bp [15 (link)]. The PCR was performed in 25 μL reaction mixture that contained 2.5 μL of 10× buffer, 3 mM MgCl2, 400 μM dNTPs, 500 nM of each primer, 1.5 U Taq polymerase (MBI Fermentas, Lithuania) and 1 μL of purified DNA or bacterial colony mixed with 1 μL of DNAzol® reagent (Thermo Fisher Scientific, USA). The PCR amplifications were performed in a Master Cycler Pro S (Eppendorf, Germany) in 34 cycles with an initial denaturation at 95 °C for 2 min and denaturation step for 1.15 min at 95 °C. The annealing, extension and final extension phases were set at 57.1 °C for 2 min, 72 °C for 2 min and 73 °C for 5 min, respectively. The PCR products were mixed with 1 μL of loading dye and were electrophoresed through 1% (w/v) agarose gel pre-mixed with RedSafeTM Nucleic Acid Staining solution (INTRON, Korea) in 1× TBE at 80 V (Bio-Rad PowerPacTM Basic, USA) for 45 min. Five μL of 100 bp DNA marker (GeneDireX®, Taiwan) was run simultaneously. The bands were documented using the gel documentation software called GeneSnap®, UK.
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3

Protein and mRNA Expression Analysis

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Protein and mRNA expression was assessed using Western blotting and qRT-PCR methods. For Western blotting, proteins from gut tissue, liver tissue, hippocampal tissue and BAT were extracted using protein extraction reagent (Thermo Scientific, 78501). The total proteins were separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride(PVDF) membrane using a wet transfer apparatus (Bio-Rad PowerPacTMBasic, Bio-Rad Mini-Protean Tetra System 10025025 Rev A 12–06250312) as described in our previous reports (Huang et al., 2020b , 2020c (link)). ImageJ was used for band densitometry analysis. For RNA extraction from frozen tissues, TRIzol reagent (Jingcai Bio., Xi'an, Shanxi, China) was used. The relative expression of mRNA was quantified using SYBR Green dye (TB Green Premix Ex Taq II). Specific primers were designed by Green Pharma, Shanghai, China. qRT-PCR was performed with the following program: 95 °C for 10 min, 95 °C for 15s, and 60 °C for 1 min in 40 cycles. The program was performed in a CFX96 Touch apparatus (Bio-Rad). The relative expression was calculated using the 2-ΔΔCT method.
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4

Electrochemical Seed Priming for Vigor

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A solution of 0.5 μM CaCl2.2H2O and 0.5 mM MgCl2.6H2O [31 ] (CaMg solution) was autoclaved, 200 mL was decanted into each of the two glass beakers, and platinum electrodes were immersed in the solutions: the anode in one beaker and the cathode in another. The circuit was completed with an agar-based potassium chloride salt bridge (30% KCl), and the solution was electrolysed at 60V potential difference using a Bio-Rad PowerPacTM Basic (Bio-Rad, USA) power pack for 1 h at room temperature, yielding anodic (oxidizing) water at pH 2.4 and cathodic (reducing) water at pH 11.2 [27 (link)]. The anodic water was discarded, and the cathodic water was used for invigoration of seeds within 1 h.
The priming solutions used were cathodic water, un-electrolysed CaMg solution and deionized water. Seeds (50 seeds per treatment) were hydrated by placing them between 20 layers of single-ply paper towel (Twinsaver Wiper Roll), which was placed on aluminium foil. To prime the seeds, 50 mL of the solutions was poured onto these paper towels. The aluminium foil containing the seeds was placed in plastic pouches, and after 24 h, just before radicle emergence, the seeds were dried back to their original masses under ambient laboratory conditions for 7 days and kept at 4 °C in air-tight bottles until required.
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5

SDS-PAGE and Western Blot Analysis of Protein Samples

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The proteins (40 μg / well) were subjected to 10–12% SDS polyacrylamide gel or 4–20% ExpressPlus PAGE Gel (Genscript, Nanjing, China) for electrophoresis and transferred onto PVDF membranes by PowerPacTM Basic (Bio-Rad, Hercules, USA). The PVDF membranes were incubated in blocking buffer (5% skim milk in TBS-T buffer) at room temperature (RT) for 1 h and then incubated with the antibodies to C5a, C5aR, His-tag, p38 MAPK, p-p38 MAPK, ERK1/2, p-ERK1/2, JNK, p-JNK and β-actin at 4°C overnight. β-actin expression in each sample was identified as the internal standard. The phosphorylation levels of p38 MAPK, ERK1/2 and JNK were normalized to the total levels of p38 MAPK, ERK1/2 and JNK respectively. After 5 times of washing with TBST-T, the PVDF membranes were further incubated with IRDye 800CW-conjugated anti-mouse IgG, HRP-conjugated anti-rabbit IgG and HRP-conjugated anti-mouse IgG at RT for 1 h. The bands were visualized by Odyssey system (for the recombinant rat C5a identification) or regular X-ray film through ECL detection system after washing the PVDF membranes 5 times. Finally, the density of radiographic band onto PVDF membranes was analyzed by using the software of Quantity One (Bio-Rad).
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6

Identification of Secreted rhEGF Protein

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Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) Tricine (Biorad Power PacTM Basic) was performed to identify the secreted rhEGF. A total of 20 μL of a mixture of sample and buffer (1:1 (vol/vol)) was loaded into the gel well. In this study, a total of 7 μL protein marker biorad (25kDa) was used as a marker of protein size. Electrophoresis was performed for 2h. The gel was electroporated in 30 V for 30min before the voltages were increased to 100 V and ran for 2h. The gel was then stained at 25°C in the dark for 18h. The gel was then washed by using distilled water, and the gel was incubated in the destaining solution for 6h at 25°C. The protein band (6.2kDa) was then captured.
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7

Plasma-Mediated Soil Microbiome Manipulation

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Our plasma corona discharge device (3DT, MULTIDYNE 1000, Germantown, WI, USA) consisted of a treating head that contained two hook-shaped wire electrodes. The plasma was generated under high voltage at electrode 2 × 12 kV and a frequency of 50 Hz at atmospheric pressure conditions, using ambient air as a carrier gas. A rotating table (15 × 15 cm) made of steel covered by a thick layer of PVC was placed under the treating head. A power supply (PowerPactm basic, Bio-Rad, Hercules, CA, USA) was attached to the table, allowing the upper part of the table to rotate at a desired number of rounds per min. A Petri dish containing the soil sample (3–5 replicates) or the isolated bacteria eluted from the soil (3–5 replicates) was placed in the center of the rotating table. The distance between the sample and the treating head was adjusted to 2 cm. The corona discharge device scheme is illustrated in Figure 1.
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8

Plasma Inactivation of S. cerevisiae

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The plasma corona discharge device (3DT, MULTIDYNE 1000, Germantown, WI, USA) (Figure 1) used in this study was comprised of a treating head containing two electrodes. To generate the plasma, the device was operated under a high voltage of 2 × 12 kV and a frequency of 50 Hz under atmospheric pressure conditions, using ambient air as a carrier gas. A rotating table (Figure 1) covered with a layer of PVC was positioned beneath the treating head. The upper part of the table was rotated at controlled rounds per min (rpm) using a power supply (PowerPactm Basic, Bio-Rad, Hercules, CA, USA). A plastic Petri dish containing the S. cerevisiae sample was placed in the center of the rotating table.
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9

Plasma Corona Discharge Device for Soil Bacterial Eradication

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The plasma corona discharge device (3DT, Multidyne 1000, Germantown Wisconsin USA) consisted of two hook-shaped wire electrodes that served as a treating head. The physical conditions for generating plasma are high voltage at the electrode (2 × 12 kV and 50 Hz; output voltage: 24VDC maximum; and output current: 0.3 AMPS maximum) with ambient air as a carrier gas at atmospheric pressure (measurements of the voltage between the anode of the plasma device and the cathode of the sensor, and the UV intensity generated by the plasma corona device, are shown at Supplementary Materials Figures S1–S3). A rotating table (15 × 15 cm), made of steel coated by polyvinyl chloride (PVC), was adjusted under the treating head at a distance of two cm. The table was connected to a power supply (PowerPacTM Basic, Bio-Rad) to enable a rotation rate of 11 rpm. As described in our previous study, this is the optimal rotation rate for soil bacterial eradication [13 (link)]. The bacterial sample was spread in a Petri dish that was placed at the center of the rotating table (Figure 1).
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10

Quantifying Cell Proliferation in Viral Infection

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After infection of LS-174T (5 × 103/well) and HT-29 (3 × 103/well) seeded in 96-well plates with multiple MOIs of rMV-Hu191-H-EGFP, cell proliferation was quantified four days by Cell Counting Kit-8 (DOJINDO, CK04). At indicated time, cells were cultured with 100 µL working solution consisted of 90 µL DMEM medium and 10 µL reagent, for 30 min at 37 °C and then recorded the absorbance at 450 nm using multifunctional microporous plate detector (PowerPacTM Basic, BIO-RAD).
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