The largest database of trusted experimental protocols

Donkey anti rabbit cy5

Manufactured by Jackson ImmunoResearch
Sourced in United States

Donkey anti-rabbit Cy5 is a secondary antibody conjugated with the fluorescent dye Cy5. It is designed to detect and visualize rabbit primary antibodies in various immunoassays and imaging applications.

Automatically generated - may contain errors

22 protocols using donkey anti rabbit cy5

1

Immunohistochemistry of SFO and OVLT

Check if the same lab product or an alternative is used in the 5 most similar protocols
The desired brain sections containing the SFO and OVLT were initially washed free‐floating in PBS. Next, brain tissue was permeabilized with 0.1% Triton X100 (Sigma) for 20 minutes at room temperature (RT), following further washing in PBS. Slices were then blocked in 5% normal donkey serum (NDS; Sigma) and 0.05% Triton X100 at RT for 30 minutes. A 48 hours incubation at 4°C in a PBS solution containing 0.05% Triton X100, 0.5% NDS and the primary antibodies rabbit anti‐GFP (1:1000, Abcam), and chicken anti‐vimentin (1:4000, Abcam). Following this incubation, slices were washed in PBS and transferred to PBS solution of secondary antibodies for 24 hours at 4°C; donkey anti‐rabbit Cy5 (1:800, Jackson ImmunoResearch) and donkey anti‐chicken Alexa 488 (1:800, Abcam). The secondary antibodies were then washed off in PBS and the slices were mounted on gelatine‐coated glass slides using VectaShield medium (Vector Laboratories, USA). Slices were then imaged on a confocal microscope (Leica SP5 upright) under the 20x objective. Z‐stacks were acquired in 3 µm steps and viewed as maximal intensity projections.
+ Open protocol
+ Expand
2

Dual-Immunofluorescence Labeling of GnIH and BFP

Check if the same lab product or an alternative is used in the 5 most similar protocols
One series of free-floating sections were rinsed in 0.1M PBS then incubated in 0.3% H202 in PBS for 10 min. After rinsing, tissue was blocked with 2% normal donkey serum, 0.3% Triton-X 100 in PBS, then transferred into primary antibody against GnIH (PAC123/124, Bentley) 1:5000 in PBS plus 0.3% Triton-100 [PBS-T] and sections were incubated in antibody overnight, on rotation, at 4°C. The next day, sections were rinsed in PBS and incubated in secondary for 1 hr at room temperature (Biotin donkey anti-rabbit 1:500, Jackson ImmunoResearch, West Grove, PA). Following rinsing, sections were incubated in ABC reagent (Vector) and then amplified by incubating in biotinylated tyramide for 30 min. Tertiary incubation for 1 hr at room temperature followed with streptavidin-Alexa594 (1:1000 in PBS, Jackson Immunoresearch). Following tertiary incubation, sections were incubated in an antibody against blue-fluorescent protein (anti-BFP; 1:5000, Abcam, Cambridge, MA) on a rotating stage, overnight, at 4°C. The next day, sections were rinsed in PBS then incubated in secondary antibody for 2 hr at room temperature (donkey anti-rabbit cy5, Jackson Immunoresearch). After rinsing in PBS-T, slides were coverslipped using DABCO antifading medium and stored in the dark at 4°C.
+ Open protocol
+ Expand
3

Immunofluorescence Staining Antibody Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary antibodies used for immunofluorescence staining were rabbit anti‐mouse ZO‐1 (Thermo Fisher Scientific, Cat No 61–7300), rat anti‐mouse VCAM‐1 (in house, clone 9DB3), rat anti‐mouse ICAM‐1 (in house, clone 25ZC7), rabbit anti‐caveolin‐1 (BD Biosciences, Cat N° 610060), and biotinylated rat‐anti‐mouse CD45 (Biolegend, CatN° 405237). Primary antibodies used for testing RNA‐seq candidate genes protein levels are listed in Table 2. Secondary antibodies used for immunofluorescence staining were goat anti‐rat IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat. No 112‐165‐003), donkey anti‐rat IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat No 712‐165‐153), goat anti‐rabbit IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat No 111‐165‐144), goat anti‐mouse IgG (H+L) Cy3 (Jackson ImmunoResearch, Cat No 115‐166‐006) donkey anti‐rabbit IgG (H+L) AlexaFluor 488 (Jackson ImmunoResearch, Cat No 711‐546‐152), goat anti‐rat IgG (H+L) AlexaFluor 488 (Thermo Fisher Scientific, Cat No A11006); donkey‐anti‐rabbit Cy5 (Jackson ImmunoResearch, Cat No 711‐175‐152), and Streptaviding‐AlexaFluor 647 (Biolgegend, CatN° 103104).
+ Open protocol
+ Expand
4

Immunofluorescence Labeling of Neuronal Structures

Check if the same lab product or an alternative is used in the 5 most similar protocols
We followed procedures identical to those previously described elsewhere28 (link). Primary antibodies used were Rabbit anti-NF200 (1:100, N4142, Sigma-Aldrich), Rabbit anti-CGRP (1:5000, C8198, Sigma-Aldrich), Rat anti-Substance P (1:500, 556312, BD Pharmingen), Biotin-IB4 (1:50, B-1205, Vector Laboratories), Rabbit anti-GFP (1:500, ab290, Abcam) and Rabbit anti-PGP9.5 (1:500, CL31A3, Cedarlane). Secondary antibodies used were Donkey anti-Rabbit Cy5 (1:500, 711-175-152, Jackson Laboratories), Donkey anti-Rat Cy5 (Cy3 Donkey anti-Rat (1:500, 712-175-153), and Streptavidin Texas Red (3:100, SA-5006, Vector Laboratories). For myelin or cell-size quantification, we used FluoroMyelin Red (1:300 in PBS, F34652, Molecular Probes) and NeuroTrace Nissl stain (1:500, 21482, Life Technologies) respectively.
+ Open protocol
+ Expand
5

Multicolor Immunofluorescence Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-hCD94 mouse IgG2a (Beckman Coulter), anti-PDI rabbit (Abcam), and anti-pan-cadherin mouse IgG1 (Abcam) were used as the primary antibodies for confocal microscopy. The secondary antibodies used were goat anti-mouse IgG2a FITC, donkey anti-rabbit Cy5, and goat anti-mouse Igg1 Cy5 and were from Jackson ImmunoResearch.
+ Open protocol
+ Expand
6

Quantifying Neuronal DNAJB1 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rodent primary cortical neurons were isolated and transfected on DIV4 as described above. Forty-eight hours later the cells were rinsed twice in PBS, then fixed in 4% paraformaldehyde for 10 min. Following 2 more rinses, neurons were permeabilized with 0.1% Triton X-100 in PBS for 20 min at room temperature, equilibrated with 10 mM glycine in PBS for 10 min at room temperature, then blocked in 0.1% Triton X-100, 3% BSA and 0.2% goat serum in PBS for 1 hour at room temperature. Primary antibodies against DNAJB1 (Abcam ab69402, rabbit polyclonal anti-Hsp40, 1:100) were added directly to the block and the samples incubated overnight at 4°C. All cells were rinsed twice quickly and 3 times for 10 min with PBS, then placed back in block solution containing the appropriate secondary antibodies (Donkey anti-rabbit Cy5, Jackson ImmunoResearch, 711-175-152, whole IgG) at a dilution of 1:250. The cells were rinsed twice quickly in PBS, and 3 times for 10 min each in PBS containing Hoescht dye (33342, Invitrogen) at 100 nM, then twice more in PBS before imaging by automated microscopy.
+ Open protocol
+ Expand
7

Immunohistochemistry and Western Blot Analysis of Drosophila Adult Brains

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-mount Drosophila adult brains were first dissected and fixed with 4% paraformaldehyde for 45 min. Samples were washed with PBT (PBS + 0.3% TX-100) three times and dissected further to remove additional debris in PBS solution. Clean and fixed brains were blocked in PBT solution with 5% Normal Donkey Serum (NDS) and subsequently probed with primary and secondary antibodies in solution with 5% NDS at 4°C overnight. Primary antibodies used in this study included: mouse anti-FasII-1D4 (1:50, DSHB) and mouse anti-Trio (1:50, DSHB), and anti-CG5003 (1:100). Secondary antibodies used from Jackson Lab included: rabbit anti-HRP-TRITC (1:500), donkey anti-mouse-Cy5 (1:200), donkey anti-rabbit Cy3 (1:200), and donkey anti-rabbit Cy5 (1:200).
For western blot analysis, fly tissue samples from adult heads were collected and lysed in lysis buffer. Protein extracts were then subjected to SDS-PAGE gel using antibodies against CG5003 and β-Actin.
+ Open protocol
+ Expand
8

Immunohistochemistry of Neuronal Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry (IHC) experiments were conducted by standard methods used routinely in our laboratory22 (link),23 (link),25 (link),34 (link) with MONs collected after 5 h following OGD. Briefly, MONs were perfusion-fixed (4% paraformaldehyde and 0.025% glutaraldehyde) and cryosectioned. Sections of 16 μm thickness were blocked in 5% normal goat/donkey (50% by volume) serum (Sigma-Aldrich, St-Louis, MO) and 0.3% Triton X-100 (Sigma-Aldrich, St-Louis, MO) for 60 min at room temperature. Then, sections were incubated in primary antibody overnight at 4°C (see Table 1 for antibodies and dilutions used). Secondary antibodies used were Donkey anti-rabbit Cy5, anti-mouse Cy5, anti-mouse Cy3, and anti-rabbit Cy3 (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA) prepared in 2% normal goat serum for 2 h.
+ Open protocol
+ Expand
9

Overexpressing PCDH19 in Primary Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
18.5 dpc hippocampi were dissected from wild type embryos and neurons dissociated with 0.5% Trypsin. 1 × 105 neurons were nucleofected with 1 μg PCDH19-FLAG using the Neon Transfection System (Invitrogen) and seeded onto poly-D-lysine coated coverslips. Primary neurons were maintained in Neurobasal medium+B27 supplement (Life Technologies). Primary neurons were cultured for 12 days then fixed in 4% PFA for 15-30 minutes. For immunofluorescence, cells were block permeablised with 0.1% Tween20 (PBST) and 10% foetal calf serum for 1 hour at room temperature. Primary neurons were then incubated overnight with anti-FLAG (1:1000, Sigma Aldrich) and anti-SYNAPSIN (1:500, Millipore) at 4˚C and then with secondary antibody (donkey anti-mouse Cy3 and donkey anti-rabbit Cy5; JacksonImmunoResearch). Images were acquired on a Nikon Eclipse Ti microscope.
+ Open protocol
+ Expand
10

Ovary Dissection and Immunostaining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
For ovary dissections, flies were fed with wet yeast for at least one day before dissection to ensure reasonable numbers of egg chambers at all stages. All tissues were dissected into Grace’s Insect Medium, fixed in 4% paraformaldehyde in PBS for 10 minutes and washed with PBT (1X PBS + 0.5% horse serum + 0.3% Triton X-100). Tissues were incubated in primary antibodies at room temperature overnight, washed with PBT then incubated at room temperature overnight in secondary antibodies. Primary antibodies used were rabbit anti-CTPsyn (Santa Cruz 134457), goat anti CTPsyn (Santa Cruz 33304), rabbit anti Drosophila Myc (d1-717, Santa Cruz 28207) and rabbit anti Drosophila MycN (d46-507, Santa Cruz 28208). Secondary antibodies used were: donkey anti-rabbit Cy5 (Jackson 711-175-152), donkey anti-goat Cy5 (Molecular Probes A11055), donkey anti-goat 549 (Jackson 711-585-152). Hoescht 33342 (1μg/ml) was used to label DNA. All samples were imaged using a Leica SP5II confocal microscope.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!