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Vacuum desk 4

Manufactured by Denton
Sourced in United States, Czechia

The Vacuum Desk IV is a desk-mounted device designed to provide a stable and controlled vacuum environment. It features a transparent enclosure and an integrated vacuum pump to maintain the desired level of negative pressure. The core function of the Vacuum Desk IV is to create a contained space with reduced atmospheric pressure, enabling a variety of controlled experiments and sample processing applications.

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18 protocols using vacuum desk 4

1

Scanning Electron Microscopy of Capsules

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The surface morphology of the capsules was analyzed by scanning electron microscopy (SEM). Briefly, samples were fixed by immersion in 2% glutaraldehyde for 30 min and then washed with ethanol gradients (30%, 50%, 80% and 99%) for 15 min each (Cruz Barrera et al. 2020 (link)). At each step, the samples were dried in an extraction cabinet and placed in a desiccator with silica gel for 48 h as an additional dehydration step. Cross sections were cut from the capsules. The fixed and dried samples were coated with a 30 nm gold microfilm using a metallizer (Denton Vacuum Desk IV, LLC, USA). Observations were made using a JEOL JSM-6490LV microscope with the Evenhart-Thornley E-T detector (SEMTech Solutions InC, Massachusetts, USA).
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2

Leaf Structure Analysis via Microscopy

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). Photomicrographs of leaf sections were made using light microscopy (Leica) tted with a digital camera. The measurements were taken from images obtained from leaf cross sections using a Nikon Eclipse CI microscope equipped with a digital camera (Moticam Pro 252b). To identify the presence of zinc in plant tissues, free-hand cuts were performed on collected leaves, dehydrated at room temperature and exposed to Zincon® reagent, following the method of Seregin et al. (2015) and Seregin and Kozhevnikova (2011) . For scanning electron microscopy observations (SEM), segments of dry leaves were mounted on stubs and coated with a thin layer of gold (Denton vacuum Desk IV, LLC). The abaxial and adaxial surfaces of leaves were analyzed with a JEOL-JSM 6390 LV scanning electron microscopy (JEOL, Tokyo, Japan). To analyze the epidermis in frontal view and count the secretory glands/mm 2 , leaf epidermises were obtained after treatment with a dissociation solution of hydrogen peroxide and glacial acetic acid (1: 1) and heating in an oven at 60ºC for 24h (Franklin 1945). Afterwards, the epidermises were washed in distilled water many times to remove the dissociation solution. Then, they were stained with 0.05% basic fuchsine aqueous and mounted in 50% glycerin on semi-permanent slides (Kraus and Arduin 1997).
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3

Temporal Evaluation of Cellular Constructs

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Cellular constructs were tested on days 0, 1, and 7 to measure the porosity and support materials of the samples as a function of time. First, cell samples were fixed with 3.7% formaldehyde for 1 h. All samples were dried in ethanol solutions, which increased in series by 10% every 10 min to reach 100% ethanol. Critical point drying (Denton Vacuum DCP-1, Moorestown, NJ, USA) was conducted to replace the ethanol with carbon dioxide. Samples were gold sputter coated (Denton Vacuum Desk IV) for 60 s. A second round of sputter coating occurred after rotating samples approximately 90° to ensure full coverage of the sample. Samples were observed with a JOEL JSM-6380LV (JEOL USA, Peabody, MA, USA) scanning electron microscope (SEM) with an acceleration voltage between 5 kV and 10 kV.
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4

Morphological Analysis of E. coli on Filters

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Scanning electron microscopy (SEM) imaging was used to examining the morphologies of E. coli cells retained on MWCNTs filters, MWCNTs–CDots filters, and MWCNTs–SWCNTs filters. All the tested filters had 3 mg MWCNTs loadings with or without 0.15 mg CDots or SWCNTs coating on the surface. The captured cells on each filter were first sat at room temperature for 1 h, then fixed overnight by immersing into 1 mL of 4% formaldehyde and 2% glutaraldehyde solution in a 1.5 mL centrifuge tube at 4 °C. The fixative was removed and the filters were gently rinsed with 1 mL DI-H2O. The filters were then air dried and coated with gold using Denton Vacuum Desk IV (Czech Republic). The FEI XL30 microscope (Netherlands) was used to take SEM images at the Shared Materials and Instrumentation Facility (SMIF) in Duke University.
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5

Scanning Electron Microscopy of Avocado Starch

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A JEOL JSM 6490LV scanning electron microscope (Akishima-Tokio, Japan) was used to analyze the avocado seed starch images. Samples were fixed on a graphite tape, impregnated with a layer of gold (Au) using a DENTON VACUUM Desk IV equipment, and subsequently analyzed in a high vacuum scanning electron microscope to obtain high-resolution images (Liu et al., 2009 (link)).
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6

Ultrastructural Analysis of Decellularized Tissues

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Longitudinal and transversal decellularized tissue samples were examined by SEM. The longest side of the commercial sample was labeled as longitudinal, while the PEM sample in the cephalocaudal direction of the esophagus was considered to be longitudinal and transversal in the coronal direction.
The samples were fixed with 10% buffered formaldehyde (Merck, Darmstadt, Germany) for 24 h, after which the formaldehyde was removed and 2.5% glutaraldehyde (Merck) was added, left in this solution for 2 h, and dehydrated by a successive series of 30%, 50%, 70%, 90%, 95%, and 99% ethanol. The samples were critical-point dried (Sandri PVT 3D Tousimis, Rockville, MD, USA) at 31 °C and 1072 PSI, fixed on graphite tape, and sputtered with gold (Denton Vacuum Desk IV, Moorestown, NJ, USA.). The samples were evaluated in a scanning electron microscope (Jeol JSM 6490 LV, Peabody, MA, USA) under vacuum to obtain high-resolution images. A secondary electron detector was used to evaluate the samples’ morphology and topography.
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7

Quantification of Cell Alignment on Nanostructured Surfaces

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Cells grown on silicon wafers containing lined nanotopographies were fixed using a 3% glutaraldehyde (Sigma Aldrich, St. Louis, MO) solution in potassium phosphate buffer, pH 7.4, with 1.0 M sucrose for 2 hours at room temperature. The sample was then dehydrated with 50%, 70%, 80%, 95%, and 100% ethanol solutions and dried overnight prior to imaging. After fixation, cells were sputter coated with 5 nm gold/palladium (Denton Vacuum Desk IV). Fixed samples were imaged using Nova-600 ESEM (FEI) using high vacuum and LEO 1550 SEM (Zeiss). Cells were imaged using the in-lens detector at high vacuum with 1 keV accelerating voltage. Cell alignment on the nanoscale topographies was quantified by drawing a line from the center of the cell to the edge of each protrusion; this was repeated for each cell on the lined patterns with multiple protrusions being included in the measurement (Fig 1C). Cells were considered aligned if at least 2 lamellipodia protrusions were within 10 degrees of the orientation of the line direction.
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8

Pectin Nanoparticle Fabrication and Characterization

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To prepare the nanoparticles, two samples were selected according to the results of the previous section, pectin with high degree of esterification (HDE ≥50%) and pectin with low degree of esterification (LDE <50%) (Chaiwarit et al., 2020 ). Pectin nanoparticles were prepared in a solution of ethanol: water in ratio 1:7 (v/v) as solvent by sonication. The mixture was sonicated with a SONICS VCX130 vibra-cell ultrasound probe, with a pulse function on 2 s and off 2 s, with 90% amplitude, 130 kW, for 5 min. The particle size, zeta potential, polydispersity index (PdI) and morphology were determined.
The hydrodynamic diameters of particles and polydispersity index were measured by dynamic light scattering (DLS, HORIBA LB- 550, 1-7-8 Higashi-Kanda Chiyoda-ku, Tokyo, Japan) and zeta potential (ζ) was measured by Malvern, Zetasizer Nano Z (instrument distributed by Cecoltec, Medellín, Colombia). The measurements were determined using freshly prepared samples and dispersed in MilliQ-water.
The morphology of the nanoparticles was determined by scanning electron microscopy (SEM, DENTON VACUUM Desk IV). The sample was prepared by adding a drop on the carbon tape, and then it was dried under vacuum for 24 h. The sample was covered with gold and then analyzed.
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9

Gold-Coated E.coli Cell Imaging

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Fresh grown E.coli cells were washed three times and resuspended in PBS solution. The cells were then treated with 8.82 mM H2O2 and 10 μg/mL CDots alone or in combination under light for 1 h, followed by overnight fixation with 4% formaldedyde and 2% glutaraldehyde solution at 4°C. After removing fixative and washing with DI-H2O, the samples at the volume of 10 μL for each were loaded on silicon slide covers and air-dried. All the samples were then coated with gold using Denton Vacuum Desk IV (Czech Republic). SEM images were taken using the FEI XL30 microscope (Netherlands) at the Shared Materials and Instrumentation Facility (SMIF) at Duke University.
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10

Electrospun Fiber Characterization via SEM

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Scanning electron microscopy (SEM) inspection was performed in a JSM-6490LV® microscope (JEOL USA Inc., Peabody, MA, USA) with a 10 kV accelerating voltage. Before the examination, samples were cryofractured on liquid nitrogen with perpendicular and parallel cuts with respect to their length, fixed onto aluminum plates with carbon tape, and coated with a thin layer of gold using Vacuum Desk IV Denton Vacuum, Moorestown, NJ, USA) apparatus. SEM micrographs were processed with Fiji® and ImageJ® software packages (version 5.2.0, National Institutes of Health, Bethesda, MD, USA) to analyze the average fiber diameter, size distribution, and relative fiber alignment of electrospun mats by quantifying the diameter of 200 randomly selected fibers in three SEM images at 500× magnification. The relative fiber alignment of the electrospun layers was then analyzed with fast Fourier transform (FFT) [33 (link)] by translating optical information into the frequency domain and extracting the radial summing of the pixel intensities in oval projection discretized into 100 points aided by the oval profile plugin. The results were normalized with respect to the minimum value in the dataset and plotted in arbitrary units ranging from 0 to 0.15 [29 (link)]. Values above 0.065 units together with two larger peaks observed at 90° and 270° were interpreted as aligned fibers [34 (link)].
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