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111 protocols using p erk

1

Protein Expression Analysis Protocol

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In this study, proteins were extracted using a protein extraction kit (Sangon Biotech), and the bicinchoninic acid (BCA) assay (Sangon Biotech) was used to determine the total protein content. After denaturation for 5 min, total proteins were separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Burlington, MA) via a constant current flow at 200 mA. Subsequently, the PVDF membranes were incubated with Bcl-2 (1:10,000), Bax (1:2000), Caspase-3 (1:5000), M-CSF (1:1000), RANKL (1:3000), OPG (1:3000), p-p65 (1:1000), p65 (1:1000), p-p38 (1:1000), p38 (1:5000), p-JNK (1:1000), JNK (1:1000), p-AKT (1:2000), AKT (1:2000), p-ERK (1:1000), ERK (1:1000), RANK (1:2000), NF-κB (1:1000), NFATc1 (1:10,000), and c-Fos (1:1000) antibodies (Abcam, Cambridge, MA) for 12 h at 4°C. TBS buffer was used to wash the PVDF membranes, and secondary antibodies (Abcam) were added and incubated at room temperature for 1 h. After the membranes were washed three times, chemiluminescent reagents were added, and the grayscale values of the bands were analyzed using ImageJ software. Each experiment was independently repeated 3 times. GAPDH was used to quantify the expression of various proteins.
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2

Western Blot Analysis of NSCLC Cell Signaling

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NSCLC cells were lysed in RIPA lysis buffer (KeyGEN, Nanjing, China), and the concentration of protein was detected by BCA Assay kit (Solar life science, Beijing, China). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE, 10%) was performed to separate the equal amounts of protein (30 μg), and proteins were then shifted onto polyvinylidene difluoride membrane (PVDF, Thermo Fisher Scientific). Five percent nonfat dried milk in TBST was applied to block the PVDF membrane for 1 h. PVDF membrane was incubated at 4°C overnight with the primary antibodies: E-cadherin (Abcam, Cambridge, MA, USA, 1:1000), N-cadherin (Abcam, 1:1000), p-Akt (Abcam, 1:1000), Akt (Abcam, 1:1,000), p-ERK (Abcam, 1:1000), ERK (Abcam, 1:1000), cleaved caspase 3 (Abcam, 1:1000), p27 Kip1 (Abcam, 1:1000), cyclin D1 (Abcam, 1:1000), CDK2 (Abcam, 1:1000) and β-actin (Abcam, 1:1000). Then, the membranes were incubated with HRP-conjugated secondary antibodies (Abcam; 1:5000) for 1 h. Protein bands were visualized using the ECL kit (Thermo Fisher Scientific). β-actin was used as the loading control. IPP 6.0 (Image-Pro Plus 6.0) was used for the densitometry analysis.
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3

rTMS Modulates Molecular Pathways in Neuronal Cells

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Repetitive transcranial magnetic stimulation was purchased from Yingzhi Company (M-100 Ultimate). All reagents are listed as follows: phosphorylated-AKT (p-AKT) (4060, Cell Signaling), AKT (4691, Cell Signaling), phosphorylated extracellular signal-regulated kinase (p-ERK) (50011, Abcam), ERK (184699, Abcam), phosphorylated epidermal growth factor receptor (p-EGFR) (40815, Abcam), EGFR (52894, Abcam), NMDA receptor (NMDAR1) (17345, Abcam), p62 (56416, Abcam), LC3 (192890, Abcam), phosphorylated mammalian target of rapamycin (p-mTOR) (5536, Cell Signaling), mTOR (2983, Cell Signaling), phosphorylated protein kinase A (p-PKA) (32390, Abcam), PKA (75993, Abcam), Oct4 (2750, Cell Signaling), Nanog (8822, Cell Signaling), Sox2 (3579, Cell Signaling), GAPDH (8245, Abcam), dizocilpine maleate (MK801) (15084, MCE), 1,4-diamino-2,3-dicyano-1,4-bis(o-aminophenylmercapto)butadiene (U0126) (1901, Beyotime), 3-benzyl-5-((2-nitrophenoxy)methyl)-dihydrofuran-2(3H)-one (3BDO) (8317, Selleck), Fluo-4/AM (1060, Beyotime), horseradish peroxidase (HRP)-mouse (931, Sigma), HRP-rabbit (934, Sigma), Alexa Fluor 488 (150077, Abcam), Alexa Fluor Cy3 (97035, Abcam), and Cell Counting Kit-8 (CCK-8) (0037, Beyotime).
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4

Evaluating Effects of PB1 and miRNAs on MAPK, NF-kB, and IFN-a Signaling

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MAPK, NF-kB, and IFN-a signaling pathways control a wide range of cellular processes, especially for the immune response. Thus, we tried to evaluated how PB1 and their induced miRNAs affect the MAPK, NF-kB, and IFN-a signal pathways by western blot. BMDCs were transfect with PB1, miR375, miR181b, In-miR375, and In-miR181b for 48 h. Then cells were collected and washed with PBS three times for the next experiments. Western blot detection was performed as previously described by us. Mouse IkBa, P-IkBa, P38, P-P38, ERK, P-ERK, JUK, P-JUK, IRF-3, and IRF-7 were purchased from Abcam or Cell Signaling Technology and detected according to each manufacturer's protocol. Protein bands were visualized using the Super ECL Plus system. GAPDH was used as a loading control (Abcam).
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5

Role of PCSK9 in Ox-LDL-Induced Endothelial Cell Apoptosis

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The human umbilical vein endothelial cell (HUVEC) line EAhy926 was obtained from the Institute of Pharmacology, Medical University of Tianjin (Tianjin, China). Ox-LDL was purchased from Xinyuan Jiahe Biotechnology (Beijing, China). Basic Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum were purchased from Invitrogen (Thermo Fisher Scientific, Inc., Waltham, MA, USA). RNase inhibitor and Moloney murine leukemia virus reverse transcriptase was purchased from Takara Biotechnology Co., Ltd. (Dalian, China). Monoclonal antibodies against PCSK9, B-cell lymphoma 2 (Bcl-2), bcl-2-like protein 4 (Bax), caspase-3, p38, phosphorylated (p)-p38, extracellular signal-regulated kinases (ERK), p-ERK, c-Jun N-terminal kinases (JNK) and p-JNK were purchased from Abcam (Cambridge, MA, USA). SYBR Green PCR Premix was purchased from Biocentury TransGene (Beijing, China). Annexin V fluorescein isothiocyanate (FITC) apoptosis kit was purchased from BD Biosciences (Franklin Lakes, NJ, USA). The flow cytometer (version, BDFACS Verse) was purchased from BD Biosciences and FlowJo software version 7.6 (FlowJo, LLC, Ashland, OR, USA) was used. The lentiviral packaging system, containing helper plasmids and target plasmids, was purchased from CWBIO (Beijing, China).
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6

Cell Cycle Regulation and Apoptosis Signaling Assay

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Wst-1 assay kit was purchased from Daeillab (Daeillab, Korea). LY294002 (PI3K/Akt inhibitor) and PD98059 (Erk inhibitor), L-Ascorbic acid were purchased from Sigma Aldrich (Sigma Aldrich, USA). BIO (GSK-3β inhibitor) was purchased from Santa Cruz Biotechnology (Santa Cruz Biotechnology, USA). Specific antibodies such as p-Akt, total-Akt, β-actin, Cyclin E, p-cdk2, p21 were obtained from Cell Signaling Technology (Beverly, USA). and p-GSK-3β, total-GSK-3β, p-Erk, total-Erk, Active-caspase-3 antibodies were purchased from Abcam (Cambridge, USA). Muse™ Muse™ Cell Cycle Kit (MCH100106) and Muse™ Cell Analyzer (PB4455ENEU) were purchased from Millipore (EMD Millipore Corporation, Germany). 3M™ Tegaderm (sterile barrier to external contaminants) was purchased from 3 M (3 M, USA).
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7

Protein Expression Analysis by Western Blot and Capillary Electrophoresis

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Specific protein expression in cell lines was determined by western blot analysis or capillary electrophoresis as described before (6 (link)). The following antibodies were applied: p-MET (Tyr1234/1235) (Cell Signaling Technology (CST) 3077S; 1:250), MET (CST 8198S;1:1000), Mcl-1 (CST 94296S; 1:500), Bcl-2 (CST 15071S; 1:500), BIM (CST 2933S; 1:500), Bcl-xL (CST 2764; 1:500), Noxa (Millipore OP180; 1:500), β-actin (Sigma Aldrich A1978, clone AC15; 1:2,000). The HRP linked secondary antibodies were from Santa Cruz Biotechnology Inc. Western blot signals were detected by using a CCD – camera system (Azure C300 imager). For capillary electrophoresis (Wes instrument, Proteinsimple) the following antibodies were used: p-MET (Tyr1234/1235) (CST 3077S, 1:25), MET (CST 8198, 1:25), p-mTOR (Ser2448) (CST 5536S, 1:25), p-ERK (Thr202/Tyr204) (CST 4370S, 1:25), ERK (CST 4695, 1:25), mTOR (CST 2983, 1:25), p-CREB (Ser133) (CST 9198S, 1:25), CREB (CST 9197S, 1:25), PGC1α (CST2178, 1:25), Vinculin (Abcam ab129002, 1:200).
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8

Antibody Validation Protocol

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Antibodies used in this study were: Flag (Sigma), β-actin (Santa Cruz), pERK(T202/Y204), ERK (Abcam) and DJ-1 (Ab Frontier).
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9

Genetic Regulation of Oenocyte Development

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The following fly lines were used: PrdGal4, AtoGal4, SpaltGal4, hthP2, UAS-Abd-A, UAS-PntP1, UAS-PntP2, UAS EGFRDN, UAS-Rho, PntP2-lacZ, SvpΔ18-lacZ, pntΔ88, pntΔ78, pntΔ33, and pntMI03880. Embryos were collected, fixed and immuno-stained using standard procedures at 25°C. The following primary antibodies were used: Abd-A (guinea pig 1:500) [28 (link)], HNF4 (rat 1:500) [49 (link)]; Salm (rabbit 1:500) [50 (link)]; PntP1 (rabbit 1:500) [41 (link)]; pERK (mouse 1:50) and β-gal (chicken 1:1000) (Abcam). Images were taken on an apotome-configured Zeiss fluorescent microscope. Oenocyte numbers were quantified using HNF4 positive staining. Imaris64 software was used to measure the expression level of wild type PntP1OE-lacZ versus PntP1OE(hox-hth)2-lacZ and the wild type PntP1OE480-lacZ versus PntP1OE480ETS-lacZ inserted in the same locus. Oenocytes were identified and counted by positive HNF4 staining in stage 15 or older embryos. Age matched embryos were fixed, immunostained, and imaged under identical conditions to quantify β-gal and HNF4 levels in oenocytes. Analysis was conducted on samples whose HNF4 staining was not significantly different. Each data set was comprised of a minimum of 10 embryos. A T-test was used to determine significance.
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10

Comprehensive Western Blot Analysis of EGFR Signaling

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For Western blot analysis, cells were lysed with RIP buffer (Boster) supplemented with RNase inhibitor and phosphatase inhibitor after cell transfection. Protein concentration was identified using a BCA kit (Invitrogen). The lysate sample was separated on a 10% SDS-PAGE gel and blotted onto blotted onto PVDF membranes. The membrane was incubated with primary antibody overnight at 4 °C, including EGFR (1:2000, Abcam), P-EGFR (1:2000, Abcam), KRAS (1:2000, Abcam), BRAF (1:2000, Abcam), MEK1/2 (1:2000, Abcam), P-MEK1/2 (1:1000, Proteintech), ERK (1:2000, Abcam), P-ERK (1:2000, Abcam), MAP3K1 (1:700, Proteintech), P-MAP3K1 (1:1000, Proteintech), β-actin (1:700, Proteintech), incubate for 2 hours at room temperature with anti-rabbit secondary antibody. Finally, protein band detection was performed using a Chemiluminescent Reagent (ECL) kit (Beyotime Biotechnology).
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