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16 protocols using lc 20at prominence

1

Fractionation of Tick Saliva for DC Analysis

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Fifty microliters of A. sculptum saliva, collected after 7–9 days of host attachment, were diluted in 450 μL of PBS, and filtrated through a 3-kDa molecular weight cutoff microfilter (Vivaspin 500, Sartorius Biolab Products, Goettingen, NI, Germany), separating the saliva into a low molecular weight (LMW; < 3 kDa) and a high molecular weight (HMW; >3 kDa) fractions. The HMW fraction was diluted again in PBS and filtrated a second time. The resulting HMW and LMW fractions were pooled, sterilized through a 0.22 μm membrane (Millipore Corporation, Billerica, MA, United States), and used in DC cultures described later.
Two hundred microliters of the LMW fraction of A. sculptum saliva were applied onto analytical reversed phase C18 column (Shim-pack Shimadzu VP-ODS, size 250 mm × 4.6 mm, 5 μm), coupled to a ultra fast liquid chromatography (UFLC) system (LC-20AT Prominence, Shimadzu, Japan) previously equilibrated with 2% acetonitrile (ACN) in acidified water (0.05% trifluoroacetic acid). Salivary molecules were eluted with a linear gradient of 2–60% ACN in acidified water over 60 min, at a flow rate of 1 mL/min. Fractions were individually used in DC cultures described later.
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2

Monomer Release Quantification via HPLC

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TEGDMA, Bis-GMA, bisphenol A, UDMA, and HEMA monomers were investigated by HPLC. HPLC was performed on an isocratic HPLC instrument (Shimadzu LC-20AT Prominence) with an LC-20AT pump, a manual injector with a loop volume of 20 µL, and a programmable variable wavelength Shimadzu SPD-20A detector. Separation was carried out with a Supelcosil LC-18 reverse-phase column (4.6 × 250 mm, 5 µm particle size). The mobile phase was 65% acetonitrile (gradient grade, Sigma-Aldrich, St. Louis, MO, USA) and 35% water (Direct-Q 3 UV system, Millipore, Burlington, MA, USA). The flow rate of the mobile phase and the run time were set to 1 mL/min and 12 min, respectively. The column temperature was 25 °C. The detection wavelength was 205 nm, and the chromatograms were analyzed using LC Solution (Shimadzu, Kyoto, Japan) software.
The qualitative and quantitative evaluations of monomer release were carried out according to the report of Pelka et al. [26 (link)]. A mixture of 10 mg of each of the monomers (Table 2) in a 4 mL acetonitrile/water mixture (1:1) was used as standard. Standard HPLC spectra were obtained by injecting this mixture into the device at appropriate rates. The retention times and peak values of the monomers were recorded, and the concentrations were determined in μmol/L based on the calculation of the area under the peaks obtained from the standard solutions.
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3

Comprehensive Analysis of HQD Extract

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HQD was prepared by grinding 90 g of skullcap, 60 g of licorice, 60 g of peony, and 490 g of jujube, then boiling at 100°C for 30 min in a 10X volume of distilled water. After filtration, the residue was extracted using an 8X volume of distilled water. The filtrates were combined in a container and stored at 4°C for subsequent animal experiments.
The HQD extract was analyzed using a Shimadzu LC-20AT Prominence high-performance liquid chromatography (HPLC) system equipped with a diode array detector. Chromatographic separation was performed on Diamonsil C18 (250 mm × 4.6 mm, 5 μm) maintained at 30°C. The mobile phase flow rate was 1 ml/min. The mobile phases were 0.1% (v/v) formic acid (A) and acetonitrile (B). The gradient elution program was as follows: 0–15 min, 95–95% A (v/v), 5–5% B (v/v); 15–30 min, 95–85% A, 5–15% B; 30–60 min, 85–77% A, 15–23% B; 60–90 min, 77–55% A, 23–45% B; 90–110 min, 55–40% A, 45–60% B; 110–115 min, 40–90% A, 60–5% B; 115–120 min, 40–95% A, 60–5% B. The injection volume was 10 μl and the detection wavelength was 280 nm (Yang et al., 2017 (link)).
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4

Superoxide Dismutase Activity Assay

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A superoxide dismutase (SOD) assay kit-WST® was purchased from Sigma-Aldrich. Cytokine kits were obtained from PeproTech® (PeproTech Brasil FUNPEC, Ribeirão Preto, SP, BR), protease inhibitor cocktail tablets were obtained from Roche® (Germany), and radioimmunoprecipitation assay (RIPA) buffer was obtained from Cell Signaling Technology®. All other chemicals and enzymes were purchased from Sigma-Aldrich® (St. Louis, USA).
The high-performance liquid chromatography system (HPLC) (LC-20 AT-Prominence, Shimadzu) coupled to a UV detector (Shimadzu, Serial no. L201550) was used. A biofreezer from the VIP Series by Sanyo was used. The spectrofluorometer was manufactured by Thermo Fisher Scientific® (Multiskan), who also supplied a Filizola® digital balance, with a capacity of 150 kg and 100 g accuracy and a stadiometer with a 2 m length and 0.1 cm precision.
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5

Organic Acid Production Quantification

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To determine organic acid production, bacteria were grown in CDM [64 ] supplemented with 7.5 mM glucose as a carbon source. Cultures were centrifuged at 13,000 rpm for 5 min and supernatants were diluted 1:5 in water and filtered through 0.22-μm syringe filters (MSI, USA). Samples were analyzed by high-performance liquid chromatography (HPLC) (LC-20AT Prominence; Shimadzu Corp., Japan) equipped with a UV detector (SPD-20AV; Shimadzu Corp.) using an Aminex HTX-87H column (Bio-Rad Laboratories, USA) at 50 °C. The mobile phase consisted of 5 mM H2SO4 with a flow rate of 0.6 ml/min. Detection was performed at 210 nm and analytical standards (Sigma-Aldrich Co., USA) were used for quantification by external calibration curves.
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6

Quantitative Analysis of NPX, DCF, and MFN

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A Shimadzu® liquid chromatograph (LC-20AT Prominence) equipped with a UV/Vis detector SPD-20A with a slit of 8nm was used. In the first 7 minutes of analysis, the 256 nm wavelength was used in the UV/Vis (for NPX) and in the last 8 minutes (for DCF and MFN), the 234 nm wavelength. The separation of the compounds was performed on a Luna C-18 reverse phase column (Phenomenex®) (250 mm x 4.6 mm, 5 µm), maintained at 25 °C, using a mobile phase of ACN: acidified water with H3PO4 (pH 2.24) 60/40 (v/v), with a flow of 1.2 mL min -1 . The mobile phase was filtered through 0.45 μm nylon membrane filters (Millipore). To control the equipment and obtain the data, a microcomputer and LC solution® software version 1.24 SP1 of Shimadzu were used.
An MX-S mini vortex and a USC-1400A ultrasound were used for the extraction process.
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7

NMR and HPLC Characterization of Compounds

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All chemicals were used as received from their manufacturer (Sigma-Aldrich, Fisher Scientific, and Alfa Aesar) unless otherwise noted. Nuclear magnetic resonance spectra were obtained on a Bruker AVANCE 400 MHz spectrometer. HPLC was carried out with either a Shimadzu Nexera XR LC-20AD equipped with a PDA detector or a Shimadzu LC-20AT Prominence equipped with UV detection. Purity of all final compounds was ≥95% as determined by HPLC analysis.
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8

HPLC Analysis of Domperidone

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The apparatus used for the HPLC analysis was Shimadzu LC equipped with LC 20 AT prominence liquid chromatograph pump and a Shimadzu SPD-20A ultraviolet (UV) prominence UV/Vis detector. A chromasol ONYX (4.6 mm×250 mm; 5 μm particle size) C 18 column was employed during the analysis. An isocratic method was used with a mobile phase containing a mixture of acetonitrile 25% and 75% of 0.25 mM potassium dihydrogen orthophosphate solution pH adjusted to 3.0 using 1% orthophosphoric acid solution. The mobile phase was vacuum-filtered through 0.45 μm Millipore membrane and degassed by ultrasonicaton. The injection volume was 20 μL. After equilibration with the solvent to obtain a stable baseline, aliquots of calibration solutions containing internal standard were injected. Domperidone was selected as internal standard. The total run time was 10 min. The absorbance of the eluent was monitored at 210 nm with a detection sensitivity of 0.250 aufs. All the analysis was performed at room temperature.
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9

Quantitative Analysis of TA Release

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To evaluate the homogeneity and quantity of TA suspended in the sheet, the sheet was cut into 4 pieces and each piece was placed in 2 mL methanol (Nacalai Tesque, Inc. Kyoto, Japan) for 72 h. The concentration of TA in the methanol was analyzed by HPLC (Prominence LC-20AT, Shimadzu, Kyoto, Japan), using a COSMOSIL(R) 5C18-AR-Ⅱ Packed Column (4.6 mm I.D. × 250 mm, Nacalai Tesque, Inc.) and column temperature of 37 °C. The mobile phases were acetonitrile (Nacalai Tesque, Inc.) at 0.55 mL/min and 10 mM ammonium acetate (Wako Pure Chemical Industries, Ltd.) at 0.45 mL/min. The absorbance of the eluate was measured over 30 min at a wavelength of 260 nm and the TA concentration was determined by using a calibration curve that had been prepared using a solution of known concentration
To examine the controlled-release ability of the TA sheet in vitro, the sheet was placed in 2 mL phosphate-buffered saline (PBS) for 24 h and then placed in PBS containing 5 μg/mL collagenase D (Roche Diagnostics, Mannheim, Germany) for another 24 h. The release test was carried out at 37 °C and the PBS was exchanged at different time points. The supernatant was collected and freeze-dried, followed by dissolution in methanol. After centrifugation (8000×g, 10 min, 4 °C), the amount of TA in the supernatant was determined by HPLC.
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10

Characterization of Oligosaccharides by HPGPC and MALDI-TOF-MS

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Relative molecular weight (Mw) and distribution of samples were determined by using high performance gel-permeation chromatography (HPGPC) carried out on a HPLC-RID system (Prominence LC-20AT, Shimadzu, Tokyo, Japan) equipped with a TSK-gel G-3000 PWXL chromatography column (7.8 × 300 mm, TOSOH, Tokyo, Japan) at 35 ℃. The mobile phase was 0.2 M NaCl and the flow rate was 0.6 mL/min. Samples having concentration of 5 mg/mL were filtered through a 0.22 µm membrane before analysis, and the injection volume was 20 μL. Dextran standards with different molecular weights (Mw 1 kDa, 5 kDa, 25 kDa, 50 kDa, 80 kDa) and Glc (Mw 180 Da) were used to established the calibration curve.
Matrix-assisted laser desorption-time of flight-mass spectrometry (MALDI-TOF-MS) measurement was used to determine the molecular weight and DP value of the oligosaccharides. Samples were dissolved in distilled water (5 mg/mL). 2,5-dihydroxy benzoic acid was dissolved in a solution of 30/70 (v/v) acetonitrile/0.1% TFA as the matrix. Equal volumes of sample and matrix were mixed. The mixture (1 μL) was placed on a AnchorChip Standard (800 μm) plate and examined using a BRUKER Autoflex Speed mass spectrometer (Karlsruhe, Germany).
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