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19 protocols using prl tk renilla luciferase control reporter vector

1

Dual Luciferase Assay for ACP6 Promoter

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For dual luciferase assays, the pRL-TK Renilla luciferase control reporter vector and pGL3-basic luciferase reporter vector were purchased from Promega (Madison, WI, USA). The pGL3-ACP6 vector was constructed by amplification of a 1,388-bp DNA fragment of the ACP6 promoter from normal germline DNA (forward primer: 5′-TAAGCAGAGCTCATCTGGAAACACAGGCTTG; reverse primer; 5′-TAAGCAGCTAGCAGTCTTCTGCGGGCG) and cloned into the pGL3-basic vector following digestion with SacI and NheI (NEB, Ipswich, MA, USA). Cells were seeded at 2 × 105 cells per well in a 6-well dish and transfected with 1 μg pGL3-ACP6 vector and 100 ng pRL-TK Renilla vector using Lipofectamine 2000 in OptiMEM Reduced Serum Media. All transient transfections were carried out in triplicate with untransfected cells as a background control. Cells were harvested after 24 hours and lysed with Passive Lysis Buffer (Promega). Firefly and Renilla luciferase activities were measured according to the manufacturer’s protocol with a Lumat LB 9507 (Berthold Technologies, Germany) luminometer. Firefly luciferase activity was normalized to Renilla luciferase signal.
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2

NF-κB Activation Assay in Cell Lines

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HEK293T and A549 cells were cultured in 24-well plates, and co-transfected with the pGL4.32 [luc2P/NF-κB-RE/Hygro] vector (Promega) and the pRL-TK Renilla Luciferase control reporter vector (Promega). At 24 h after transfection by PEI, the cells were lysed and the luciferase activity was measured with a GloMax 20/20 luminometer (Promega), using the Dual-Luciferase Reporter Assay System (Promega). At 18 h after transfection, TNF-α (10 ng/ml) or IL-1β (1 ng/ml) was added to the medium. The cultures were incubated further for 6 h and then the cells were analyzed.
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3

HNF4α Regulation of ABCC6 Promoter Activity

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HeLa cells were plated onto 96-well plates starting with 10.000 cells/well. FuGENE HD transfection reagent (Promega) complex containing serum-free medium and 2 μg total plasmid DNA was added to cells in growth medium. Triple co-transfection was performed with the phACCC6(-332/+72)Luc construct ((see [24 (link)]) composed of the ABCC6 promoter fragment (-332/+72) cloned upstream of the luciferase coding cassette in the pGL3-Basic vector (Promega)), pcDNA5-FRT/TO plasmid encoding HNF4α variants (GenScript) and pRL-TK Renilla luciferase Control Reporter Vector (Promega). Cells were harvested and lysed after 48 hours. Luciferase activity was determined by Victor luminometric plate reader (Perkin Elmer) using the DualGlo Luciferase system (Roche). The obtained results were normalized firstly for the background noise, then for transfection efficiency by the co-transfected control reporter vector.
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4

Methylation Analysis of CX3CR1 Gene Promoter

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To generate the CX3CR1 gene promoter construct (pGL3-CX3CR1), the CX3CR1 gene promoter region was amplified from genomic DNA using high-fidelity DNA polymerase (Invitrogen Life Technologies), cloned into pGL3-basic vector (Promega, Madison, WI) and verified by sequencing. In methylating the CX3CR1 promoter construct, the pGL3-CX3CR1 construct and pGL3-basic vector were incubated for 1 hour at 37°C in the presence or absence of SssI methylase (New England Biolabs, Beverly, MA) with 80 μM S-adenosylmethionine (New England Biolabs). Methylated and unmethylated constructs were purified using a Qiagen PCR purification kit (Qiagen) and transfected into 293 T cells using lipofectamine (Invitrogen Life Technologies) according to the manufacturer’s instructions. The pRL-TK (Renilla luciferase control reporter vector, Promega) was co-transfected as an internal control for transfection efficiency. Transfected cells were harvested after 24 hours and analyzed according to the manufacturer’s instructions for luciferase and Renilla activities.
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5

NF-κB and IFN-β Luciferase Assays

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Transfection experiments were performed using PEI (polyethylenimine). The pGL4.32[luc2P/NF-κB-RE/Hygro] vector (Promega), the ISRE-luciferase reporter (a kind gift from Dr. Koichi Nakajima, Osaka City Univ.), the pGL3-IFNβ-luciferase reporter (a kind gift from Dr. Osamu Takeuchi, Kyoto Univ.), or pGL4-IFIT1-pro, which was constructed as described59 (link), was co-transfected into HEK293T or MEF cells with the pRL-TK Renilla Luciferase control reporter vector (Promega)60 (link). At 24 h after transfection, the cells were lysed and the luciferase activity was measured with a GloMax 20/20 luminometer (Promega), using the Dual-Luciferase Reporter Assay System (Promega).
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6

Cloning of SRSF1 and SRSF2 Splice Factors

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The coding sequences of the splice factors arginine rich splicing factors 1 and 2 (SRSF1 and SRSF2) were PCR amplified from HEK293T cDNA and cloned by XbaI and BamHI digestion into pEXPR-IBA103 (IBA, Göttingen, Germany) with a C-terminal Twin-Strep-tag. The primer sequences were: SRSF1-XbaI fwd: 5′- CTATATCTAGAATGTCGGGAGGTGGTGTGATTC-3′, SRSF1-nonstop-BamHI rev: 5′- CTATAGGATCCTGTACGAGAGCGAGATCTGCTA-3′ SRSF2-XbaI fwd: 5′- CTATATCTAGAATGAGCTACGGCCGCCCCCCTC-3′, SRSF2-nonstop-BamHI rev: 5′-CTATAGGATCCAGAGGACACCGCTCCTTCCTCTTC-3′. All constructs were verified by DNA sequencing (Seqlab, Göttingen, Germany). Transient transfections were performed as described above. 200 ng of expression plasmid DNA and 200 ng of the AGA minigene construct were cotransfected. For reporter gene assays, this was done together with 50 ng of pRL-TK Renilla luciferase control reporter vector (Promega, Walldorf, Germany). All further steps were as described in Section 2.2.
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7

NF-κB Activation Assay in Neuro2a Cells

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Neuro2a cells (5 × 104 cells/well) were cultured in 24-well plates overnight, and then co-transfected with the TDP-43 expression vector, the LUBAC expression vector, the pGL4.32 [luc2P/NF-κB-RE/Hygro] vector (Promega), and the pRL-TK Renilla Luciferase control reporter vector (Promega) using Lipofectamine 2000. The medium was replaced at 4 h-post transfection. At 24 h after transfection, the cells were lysed and the luciferase activity was measured with a GloMax 20/20 luminometer (Promega) using the Dual-Luciferase Reporter Assay System (Promega).
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8

Dual-Luciferase Reporter Assay for Gene Expression

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Cells were seeded in 24‐well plates in triplicates. The next day, they were transfected with the FuGENE HD transfection reagent (Promega, E2311) according to the manufacturer's instructions. Thereby, 100 ng of firefly luciferase reporter vector and 30 ng of pRL‐TK Renilla luciferase control reporter vector (Promega, E2241) and the following amounts of expression vectors were transfected: ZEB1 (100 ng), YAP, FOSL1, JUN (25 ng). Transfection reactions were adjusted to equal amounts with the corresponding empty control vectors. For reporter assays after transient knockdown, cells were transfected with siRNA 1 day after seeding. Transfection of reporter constructs followed the next day. In all cases, cells were harvested after 72 h and lysed in passive lysis buffer (Promega, E1941). Luciferase activity was measured using the Dual‐Luciferase Reporter Assay system according to Hampf and Gossen (2006) using a CentroXS³ LB 960 Luminometer (Berthold). Values of the firefly luciferase were normalised to their corresponding Renilla values, serving as a transfection control.
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9

Modulating let-7i expression in HIV-1 infection

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The infectious HIV-1 clone (pNL4-3) was obtained through the AIDS Research and Reference Reagent Program, NIAID, NIH, USA. The let-7i promoter reporter (pGL4-let-7i) was kindly bestowed by Dr. Ashish Lal (Genetics Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA). pRL-TK renilla luciferase control reporter vector was from Promega (USA). A perfect binding sequence of let-7i was inserted into the 3′ UTR of luciferase gene of the pMIR-REPORT™ miRNA Expression Reporter Vector (Promega, USA) to generate pMIR-REPORT-let-7i_bindingsite construct.
Anti-human CD3 and anti-human CD28 antibodies were from BD Biosciences (Palo Alto, CA). The anti-IL-2 and anti-CD95 antibodies for flow cytometry analysis were from BD Biosciences (Palo Alto, CA). Annexin-V cell apoptosis assay kit was from Keygen (Nanjing, China).
The let-7i mimics and negative control (mm-NC) were purchased from RiboBio (Guangzhou, China). let-7i mimic sequence: 5′-UGAGGUAGUAGUUUGUGCUGUU-3′; NC mimic sequence: 5′-UUUGUACUACACAAAAGUACUG-3′. The let-7i antisense inhibitor and control were purchased from GenePharma (Shanghai, China). Small interfering RNAs (siRNAs) smart pool used to specifically target human IL-2 mRNA were synthesized by RiboBio (Guangzhou, China).
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10

Investigating NF-κB Regulation by RNF31

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RNF31-knockout (KO) 293T cells were cultured in DMEM containing 10% fetal bovine serum, 100 IU/ml penicillin G, and 100 µg/ml streptomycin at 37°C under 5% CO2. Transfection experiments were performed using polyethyleneimine (PEI MAX; Polysciences). Briefly, plasmid DNA and PEI [1:2 ratio of total DNA (µg): PEI (µg)] were mixed in PBS, and incubated for 15 min at RT. Then the DNA/PEI mixture was added to cells. For the luciferase assay, a pGL4.32 [luc2P/NF-κB-RE/Hygro] vector and a pRL-TK Renilla Luciferase control reporter vector (Promega) were co-transfected into RNF31-KO 293T cells with a FLAG-RNF31 expression vector (wild-type or mutant), RBCK1-myc, and HA-SHARPIN. At 24 h after transfection, the cells were lysed, and the luciferase activity was measured using a GloMax 20/20 luminometer (Promega) using the Dual-Luciferase Reporter Assay System (Promega). The enzyme activity of Renilla luciferase was used to normalize the firefly luciferase enzyme activity.
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