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5 protocols using igm percp cy5

1

Comprehensive Immune Cell Profiling

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The following antibodies were used: CD4-V500, CD11c-PE-Cy7, CD19-V450, CD19-APC-Cy7, CD69-PE-Cy7, IgM-PerCP-Cy5.5, CD45.2-V500, CD45.2-APC (BD Biosciences), IgD-PE, CD45.1-FITC, CD11b-PerCP-Cy5.5, CD21-PB, CD23-PE-Cy7, AA4.1-APC (eBiosciences), and CD86-PB, CD45.1-PB (BioLegend). Following red blood cell lysis, Fc receptor blockade, and staining, cells were processed on a BD FACSVerse or LSR II flow cytometer and analyzed using FlowJo v9.6.4 (Treestar).
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2

Isolation and Expansion of SARS-CoV-2-Specific B Cells

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Blood samples were screened for SARS-CoV-2 RNA and for antibodies against HIV, HBV and HCV. Peripheral blood mononuclear cells (PBMCs) were isolated from heparin-treated whole blood by density gradient centrifugation (Ficoll-Paque PREMIUM, Sigma-Aldrich). After separation, PBMC were stained with Live/Dead Fixable Aqua (Invitrogen; Thermo Scientific) in 100 μL final volume diluted 1:500 at room temperature RT. After 20 min incubation cells were washed with PBS and unspecific bindings were saturated with 50 μL of 20% normal rabbit serum (Life technologies) in PBS . Following 20 min incubation at 4°C cells were washed with PBS and stained with SARS-CoV-2 S-protein labeled with Strep-Tactin®XT DY-488 (iba-lifesciences cat# 2-1562-050) for 30 min at 4°C. After incubation the following staining mix was used CD19 V421 (BD cat# 562440), IgM PerCP-Cy5.5 (BD cat# 561285), CD27 PE (BD cat# 340425), IgD-A700 (BD cat# 561302), CD3 PE-Cy7 (BioLegend cat# 300420), CD14 PE-Cy7 (BioLegend cat# 301814), CD56 PE-Cy7 (BioLegend cat# 318318) and cells were incubated at 4°C for additional 30 min. Stained MBCs were single cell-sorted with a BD FACS Aria III (BD Biosciences) into 384-well plates containing 3T3-CD40L feeder cells and were incubated with IL-2 and IL-21 for 14 days as previously described (Huang et al., 2013 (link)).
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3

Comprehensive B cell immunophenotyping

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B1 cells were detected via mAB IgM PerCP-Cy5.5 (clone R6-60.2; 1:100; BD Biosciences), CD19 APC-H7 (BD Biosciences), CD5-AlexaFlour647 (clone YTSS 121.5.2; 1:50; Serotec, Kidlington, UK) and CD11b (clone M1/70; 1:500; BD Biosciences), which was visualized by a secondary goat anti rat Ig polyclonal Ab (1:500; BD Biosciences) conjugated with PE. B2 cells were identified using IgM-PerCP-Cy5.5 and CD19 APC-H7. Furthermore, mAB CD21/35 APC (clone 7G6; 1:500; BD Biosciences), CD23 PE and IgD FITC (both kindly provided by R. Förster) were used for a more detail B cell characterisation. Around 1x106 cells were incubated with mAB CD45.1/Ly.1 PE (clone A20; 1:100; Biolegend) or IgMa FITC (clone DS-1; 1:500; BD Biosciences) to identify the injected cells. Subpopulations of B cells were identified by mAB B220 (clone RA3-6B2; 1:1000; BD Biosciences), IgM PerCP-Cy 5.5, IgD FITC, IgA (clone C10-3; 1:500; BD Biosciences), CD80 PerCy5.5 (clone 16-10A1; 1:1000; BD Biosciences) and CCR9 PE (clone eBIOCW-1.2; 1:100; eBioscience). IgA was visualized by a polyclonal secondary goat anti-rat Ig (1:500; BD Biosciences) conjugated with APC. Injected CD45.1/Ly.1 cells were analysed by counting more than 1000 positive cells/ organ. BrdU was detected as described previously [35 (link)]. Flow cytometric analyses were performed using the FACS Canto (BD Biosciences).
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4

Isolation of SARS-CoV-2 Memory B Cells

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Cryopreserved PBMCs from COVID-19 convalescent donors were thawed and stained with DAPI (BD564907), CD14-BV510 (BioLegend 301842), CD3-BV510 (BioLegend 317332), CD56-BV510 (BioLegend 318340), CD19-ECD (Beckman Coulter IM2708U), CD21-BV711 (563163), IgA-Alexa Fluor 647 (Jackson Immunoresearch 109-606-011), IgD-PE-Cy7 (BD 561314), IgM-PerCP-Cy5.5 (BD561285), CD27-Alexa Fluor 488 (BioLegend 393204) and CD38-APC-Cy7 (BioLegend 303534). Stained cells were then sorted using the BD FACSAria IIIu in a BSL3 facility. This procedure involved gating out all but live CD19+CD14-CD3-CD56-IgM-IgD- cells, and then gating on IgA to yield purified populations of IgA-producing and IgG-producing memory B cells (MBCs).
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5

Phenotyping Memory B Cells by Flow Cytometry

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Cryopreserved PBMCs were thawed and stained with the following panel: DAPI (BD564907), CD14-BV510 (BioLegend, 301842), CD3-BV510 (BioLegend, 317332), CD56-BV510 (BioLegend, 318340), CD19-ECD (Beckman Coulter, IM2708U), CD21-BV711 (BD, 563163), IgA-Alexa Fluor 647 (Jackson ImmunoResearch, 109-606-011), IgD-PE-Cy7 (BD, 561314), and IgM-PerCP-Cy5.5 (BD, 561285), CD27-Alexa Fluor 488 (BioLegend, 393204) and CD38-APC-Cy7 (BioLegend, 303534). The cells were sorted using the BD FACSAria IIIu in a BSL3 facility and gated on live CD19+CD14CD3CD56IgMIgDIgA+/IgA (memory B cells).
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