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3 protocols using poly adp ribose polymerase 1 parp1

1

Western Blot Analysis of Metabolic and Inflammatory Proteins

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The protein samples were separated using 8%, 10%, and 12% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and were transferred to polyvinylidene difluoride membranes (Cat# ISEQ. 00010, LOT# R6PA4145H; Merck Millipore, USA). The membranes were blocked with 5% skim milk for 3 h at 37°C and were incubated for 14 h at 4°C with the following diluted primary antibodies: pyruvate kinase (PK; 1:1,000; Wanlei, China), uncoupling protein 1 (UCP1; 1:1,500; Wanlei), succinate dehydrogenase (SDH; 1:500; Bioss), pyruvate dehydrogenase complex (PDHX; 1:500; Affinity, USA), lactate dehydrogenase (LDH; 1:1,000; Wanlei), poly ADP-ribose polymerase 1 (PARP1; 1:500; Proteintech, China), Cas8 (1:1,000; CST, USA), nuclear factor kappa B (NF-κB; 1:500; Wanlei), interleukin-1β (IL-1β; 1:1,000; Wanlei), and TNF-α (1:500; Wanlei). After washing thrice for 15 min each with phosphate-buffered saline with Tween 20, the membranes were incubated for 2 h at 37°C with peroxidase-conjugated secondary antibodies against rabbit IgG (Cat# sc-2357, RRID: AB_628497; Santa Cruz Biotechnology, Argentina). After washing three times by PBST for 15 min each again, the bound antibodies were visualized through chemiluminescence by using the ECL-plus reagent (GE Healthcare, UK). The GAPDH content was analyzed as the loading control by using a rabbit polyclonal antibody.
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2

Liver Protein Analysis by Western Blot

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Mouse livers were homogenized in ice‐cold RIPA buffer containing protease and phosphatase inhibitors (Thermo‐Fisher), and then, diluted in laemmli buffer containing 5% of β‐mercaptoethanol before being heated at 95°C for 5 min. Proteins were resolved by SDS‐PAGE before being transferred to a nitrocellulose membrane. Membranes were probed with primary antibodies targeting the aryl hydrocarbon receptor (AhR) (Cell Signaling Technologies), cleaved caspase‐3 (Cell Signaling Technologies), Ly6G/6C (Thermo‐Fisher), glycoprotein VI (GPVI) (Millipore, Burlington, MA), 5‐hydroxytrytamine receptor 2B (5‐HT2B) (Novus Biologicals, Littleton, CO), indoleamine 2,3‐dioxygenase (IDO2) (Thermo‐Fisher), nuclear factor kappa‐light‐chain‐enhancer of activated B cells (NFkB) p65 subunit (Cell Signaling Technologies), phospho‐NFkB p65 subunit (Cell Signaling Technologies), Poly [ADP‐ribose] polymerase 1 (PARP‐1) (Proteintech, Rosemont, IL), protein disulfide isomerase (PDI, Cell Signaling Technologies), or vinculin (Cell Signaling Technologies) overnight before being probed with an appropriate secondary antibody for 1 hr. The Clarity electrochemiluminescent substrate kit and ChemiDoc MP imaging system (BioRad, Hercules, CA) were used for detection and image acquisition.
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3

Immunoblotting for Extracellular Matrix and Cell Markers

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RIPA lysis buffer (Cat: C1053, Applygen, China) containing Cocktail (50x) (Cat: P1265, Applygen, China) was used to prepare tissues and cells. After isolating proteins from homogenates, immunoblotting was performed overnight at 4°C using the following rabbit primary antibodies: Col III (Cat: 22734-1-AP, dilution: 1 : 1000, Proteintech, USA), Col I (Cat: 66761-1-Ig, dilution: 1 : 1000, Proteintech, USA), CD9 (Cat: ab263019, dilution: 1 : 1000,Abcam, UK), CD63 (Cat: ab134045, dilution: 1 : 1000, Abcam, UK), TSG101 (Cat: ab133586, dilution: 1 : 1000, Abcam, UK), TNC (Cat: 67710-1-Ig, dilution: 1 : 1000, Proteintech, USA), TNMD (Cat: ab203676, dilution: 1 : 1000, Abcam, UK), SCXA (Cat: DF13293, dilution: 1 : 1000, Affinity, USA), PCNA (Cat: 10205-2-AP, dilution: 1 : 1000, Proteintech, USA), poly ADP-ribose polymerase 1 (PARP1, Cat: 13371-1-AP, dilution: 1 : 1000, Proteintech, USA), catalase (Cat: 21260-1-AP, dilution: 1 : 1000, Proteintech, USA), and GAPDH (Cat: 60004-1-Ig, dilution: 1 : 1000, Proteintech, USA). Horseradish peroxidase- (HRP-) conjugated secondary antibodies (Cat: 15015&15014, dilution: 1 : 10000, Proteintech, China) were then incubated with the membranes for 1 h at room temperature. Chemiluminescent signals were developed with an enhanced chemiluminescence (Millipore, USA) and detected by the ChemiDoc imaging system (Tanon, China).
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