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13 protocols using kinase glo kit

1

Kinase Activity Inhibition Assay

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Phosphorylation assays were carried out using the commercial Kinase Glo kit (Promega) in a final volume of 100 μl in 96-well solid white polystyrene microplates. The concentrations of ATP (10 μM), DQPknB (0.056 μM), and GarA (0.48 μM) were standardized using the manufacturer's recommendations. All reactions were carried out at room temperature and were started with reaction buffer mixture (200 mM of Tris, 8 mM of MnCl2, 10 mM of KF, and 1 mM of DTT), GarA, DQPknB, and the extract (10, 30, 65, 125, 250, and 500 μg/ml). A negative control was elaborated by replacing the volume of the extract with DMSO. After 10 min, ATP was added, and the reaction was incubated for an additional 10 min. At the end of this period, the reaction was stopped by the addition of 50 μl of the Kinase Glo reagent, and after another 10 min, the luminescent signal was measured on a SpectraMax Gemini XS microplate spectrofluorometer (Molecular Devices). Half-maximal inhibitory concentration (IC50) values were calculated using the GraphPad Prism 5 software.
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2

Optimized Kinase Assay Protocol

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Kinase assays were performed using a kinase Glo kit (Promega) and were optimized according to the instructions of the manufacturer with the following modifications. A standard assay would include two incubation steps: an initial 30-min incubation at 37°C of a reaction mixture typically containing recombinant CDPK1 kinase, 50 nM CaCl2, kinase buffer (50 mM Tris [pH 7.4], 10 mM MgCl2, 2 mM DTT), and TgDJ-1 (unless otherwise stated). Following this initial incubation, 10 µM ATP, 10 µM syntide, and 500 µM CaCl2 were added (unless otherwise stated) and the reaction mixture was incubated for a further 30 min at 37°C. Assays were then processed according to the instructions of the manufacturer.
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3

Quantifying Membrane ATP Levels

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The total ATP levels were measured using the kinaseglo kit (Promega). Briefly, the membrane extracts were freeze-thawed and mixed with kinaseglo reagent. The bio-luminescence was measured using a luminometer plate reader (BioTek). The ATP levels were normalized to the amount of total protein in each membrane compartment.
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4

Quantitative NDPK Activity Assay

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HUVECs or retinae were lysed in RIPA buffer and immediately subjected to the NDP kinase activity assay. The test utilizes the transphosphorylase activity of NDPK to generate ATP from GTP and ADP. The newly-formed ATP is directly used by firefly luciferase to convert D-luciferin to the light-emitting oxyluciferin with the Kinase-GLo kit (V6711, Promega, Germany). Under the experimental conditions, the luminescent signal is proportional to the amount of ATP produced, and thus to the enzymatic activity of NDPK. A standard curve was generated by adding increasing concentrations of ATP (0.5–10 µM) in the absence of NDPKs. The NDP kinase activity in cell lysates was measured in a 384-well plate. Lysates were diluted in assay buffer consisting of 50 mM Tris-HCl, pH 7.5, 2 mM MgCl2, 1 mM dithiothreitol (DTT), and 0.01% bovine serum albumin (BSA). The readout was commenced by adding the luciferase substrate (V6711, Kinase-GLo, Promega, Germany). After 5 min of incubation, the luminescence was recorded at room temperature using a multiplate reader (EnVision, PerkinElmer, Germany).
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5

Ulk Kinase Activity Assay

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Wild-type and mutant Ulk proteins transfected in HEK293T were immunoprecipitated with anti-Myc antibody and protein A/G agarose (Santa Cruz Biotechnology). The immune complex was washed three times with RIPA buffer (1% Triton X-100, 0.5 deoxycholate, 50 mM Tris·HCl at pH 7.5, 150 mM NaCl, 0.1 mM EDTA, proteinase inhibitors, protein phosphatase inhibitors) and once with kinase assay buffer (20 mM HEPES at pH 7.4, 1 mM EGTA, 0.4 mM EDTA, 5 mM MgCl2, 0.05 mM DTT) (Kim et al. 2011 (link)). Separately transfected HA-Beclin-1 was immunoprecipitated using EZview Red HA-agarose and eluted with HA peptide (Sigma-Aldrich). Kinase reaction was performed by incubating Ulk beads with HA-Belcin-1 elution in kinase assay buffer containing 10 µM ATP for 30 min at 37°C. Remaining ATP levels in the buffer were determined using a Kinase-Glo kit from Promega. Relative Ulk activity was determined by the amount of ATP consumed.
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6

Kinase-Glo Assay for CK-1δ Inhibition

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The “Kinase-Glo”
Kit from Promega was used to screen compounds for activity against
CK-1δ. Kinase-Glo assays were performed in assay buffer using
black 96-well plates. In a typical assay, 10 μL of test compound
(dissolved in dimethyl sulfoxide [DMSO] at 1 mM concentration and
diluted in advance in assay buffer to the desired concentration) and
10 μL (16 ng) of enzyme were added to each well followed by
20 μL of assay buffer containing 0.1% casein as substrate and
4 μM ATP. The final DMSO concentration in the reaction mixture
did not exceed 1%. After 60 min incubation at 30 °C, the enzymatic
reaction was stopped with 40 μL of Kinase-Glo reagent. Glow-type
luminescence was recorded after 10 min using a FLUOstar Optima (BMG
Labtechnologies GmbH, Offenburg, Germany) multimode reader. The activity
is proportional to the difference of the total and consumed ATP. The
inhibitory activities were calculated on the basis of maximal activities
measured in the absence of inhibitor. The IC50 was defined
as the concentration of each compound that reduces a 50% the enzymatic
activity with respect to that without inhibitors.
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7

OGT-CaMKII Interaction Assay

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Individually transfected OGT and CaMKII proteins were immunoprecipitated with anti-Myc antibody and protein A/G agarose. The immune complex was washed three times with RIPA buffer and once with assay buffer (50 mM Tris-HCl at pH 7.5, 10 mM MgCl2, 0.1 mM EDTA, 2 mM DTT, 0.01% Brij 35). The OGT and CaMKII beads were mixed and incubated in assay buffer containing 2 mM CaCl2, 1.2 µM calmodulin (New England BioLabs), and 10 µM ATP for 30 min at 30°C. Remaining ATP levels in the buffer were determined using a Kinase-Glo kit from Promega. Relative activity was determined by the amount of ATP consumed.
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8

Salvianolic Acids Inhibit GSK-3β Kinase

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Test compounds were purchased from commercial sources. Caffeic acid and rosmarinic acid were obtained from Sigma-Aldrich (St. Louis, MO, USA). Salvianolic acids A and B (Sal A and Sal B) were purchased from TAUTO (Shanghai Tauto Biotech Co. Ltd., Shanghai, China) and Sal C was purchased from Herbest (Baoji Herbest Bio-Tech Co. Ltd., Baoji, China). All the tested compounds were of HPLC grade with ≥98% purity. Human recombinant GSK-3β was obtained from Prospec (ProSpec-Tany TechnoGene Ltd., Ness-Ziona, Israel). GSM substrate mimicking glycogen muscle synthase was obtained from Merck Millipore (Millipore Corporation, Temecula, CA, USA) and a Kinase-Glo kit was obtained from Promega (Promega Corporation, Madison, WI, USA). Adenosine 5-triphosphate (ATP) disodium salt hydrate, ammonium hydroxide, 4-(2-hydroxyethyl) piperazine-1-ethanesulfonic acid (HEPES), ammonium acetate, ethylene glycol-bis(-aminoethylether)-N,N,N′,N′-tetraacetic acid tetrasodium salt (EGTA), formic acid, ethylenediaminetetraacetic acid (EDTA), dimethyl sulfoxide (DMSO), 3-[(3-chloro-4-hydroxyphenyl)amino]-4-(2-nitrophenyl)-1H-pyrrol-2,5-dione, and magnesium acetate tetrahydrate were purchased from Sigma-Aldrich (St. Louis, MO, USA). All other chemicals and solvents were purchased from E. Merck, Fluka (Rupert-Mayer-Str., Munich, Germany) and Sigma-Aldrich unless otherwise stated.
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9

Purification and Kinetic Analysis of PRPS1 and PRPS2

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His-PRPS1 and His-PRPS2 were expressed in E.coli BL21 cells and purified using a Ni2+–Sepharose affinity column (cytiva, 17-5248-01). NAD/NADH/GDP/ADP were diluted to the corresponding concentration with assay buffer (50 mM Tris, pH 7.5, 5 mM MgCl2, 5 mM Na3PO4, 1 mM DTT, 1 mM EDTA, 600 µM ATP, 600 µM R-5-P). Enzyme (50 mM Tris, pH 7.5, 5 mM MgCl2, 5 mM Na3PO4, 1 mM DTT, 1 mM EDTA, 2 μg/mL PRPS1 or 2) was blended with the mixture in equal volume for a final reaction system (50 mM Tris, pH 7.5, 5 mM MgCl2, 5 mM Na3PO4, 1 mM DTT, 1 mM EDTA, 300 µM ATP, 300 µM R-5-P, 1 μg/mL PRPS1 or 2). The reaction was incubated at 37°C for 10 min and terminated by adding an equal volume of 10 mM CaCl2. For the kinetics study, the activity of PRPS1/2 was measured based on ATP consumption that was detected according to the manufacturer’s instructions of the Kinase-Glo Kit (Promega, V6072).
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10

Lycorine EGFR Kinase Inhibition Assay

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The half maximal inhibitory concentration (IC50) values of Lycorine and positive control Gefitinib against EGFR kinase activity were carried out using the Promega Kinase-Glo kit (Promega, Mannheim, Germany) according to the manufacturer’s protocol in the presence of 600 nM ATP. Data were presented as means and 95% confidence intervals (CIs) from three independent experiments.
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