The largest database of trusted experimental protocols

Trizol

Manufactured by Biosharp
Sourced in China

TRIzol is a reagent used for the isolation and purification of total RNA from various biological samples, including cells, tissues, and organisms. It is a monophasic solution containing phenol, guanidine isothiocyanate, and other proprietary components that facilitate the effective separation of RNA from DNA and proteins during the extraction process.

Automatically generated - may contain errors

9 protocols using trizol

1

Quantifying METTL14 and miR-1306-5p in Biological Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
qRT-PCR was used to detect the RNA expression of METTL14 and miR-1306-5p. All the RNA was collected from blood, cell, or tissue samples using the miRNeasy extraction kit (QIAGEN). For quantitative analysis, the cDNA was reversed by miRNA Reverse Transcription Kit (MR101-01/02, Vazyme) and detected by all-in-one miRNA RT-qPCR Detection Kit (Q711-02, Vazyme) with U6 as the internal control. As for METTL14 mRNA detection, TRIzol (BS259A, Biosharp) was used for RNA isolation and PrimeScript RT Reagent kit (R223-01, Vazyme) was used to reverse RNA into cDNA. SYBR Green Real-Time PCR Master Mix (Q711-02, Vazyme) was used for RT-PCR assay with β-actin as the control. The primers for miR-1306-5p, U6, METTL14, and β-actin were listed as below: METTL14, sense, 5′- GAGTGTGTTTACGAAAATGGGGT-3′; antisense, 5′- CCGTCTGTGCTACGCTTCA-3′; β-actin: sense, 5′-AGCGAGCATCCCCCAAAGTT-3′, antisense: 5′-GGGCACGAAGGCTCATCATT-3′; U6: sense, 5′-CTCGCTTCGGCAGCACA-3′, antisense: 5′-AACGCTTCACGAATTTGCGT-3′; miR-1306-5p reverse primer: 5′-CTCAACTGGTGTCGTGGAGTCGGCAATTCAGTTGAGTGGACGTT-3′; miR-1306-5p sense: 5′-AATACCACCTCCCCTGCA-3′. 2ΔΔCt method was used for analysis of relative expression.
+ Open protocol
+ Expand
2

Quantitative Real-Time PCR Analysis of Cardiac Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from sample heart tissues with Trizol (Biosharp) according to the manufacturer’s instructions. cDNA was synthesized with HiScript III RT SuperMix for qPCR (+ gDNA wiper) (Vazyme). The ChamQ Universal SYBR qPCR Master Mix (Vazyme) was used in quantitative real-time PCR (qRT-PCR) with Quant Gene 9600 system (Bioer Technology). β-actin was used as internal control to calculate the relative mRNA expression in each sample by the 2−∆∆Ct method. The primer sequences (Generay Biotech) of each gene were listed in Table 1.

The primer sequences used for analysis

GenesPrimer sequences
BgnR: TGTGCTACTCACCTTGCTG
F: TGGTGTCTGAACCTGAAGCC
CtgfR: TGCTGTGCATCCTCCTACCG
F: CAGAGAGCGAGGAGCACCAA
Col5a2R: ATGGGGTATGTAAAGCCTCAGC
F: AGGACACAGGGGGCATTACT
ElnR: CTGACTCGCGACCTAATCAA
F: TCCTTGTCCTGTGGGTTTCC
Sox9R: GGAAGGTAACGATTGCTGGG
F: CCCTCCTCGCTGATACTGGT
Tgfb3R: TGATGACCCACGTCCCCTAT
F: CAGACTCCGAGGTCTCCTGA
PostnR: GCAAACCACTTTCACCGACC
F: CGTTGGTCCATGCTCAGAGT
Tgfb2R: GCCAGGACACGAAAATCACG
F: TCCCTCCCTCCTGTCACAAA
β-actinR: GGGCAACCTTCCCAATAAAT
F: CCATGTTCCAAAACCATTCC
+ Open protocol
+ Expand
3

Quantitative Analysis of Gene Expression in MLO-Y4 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA of MLO-Y4 cells was extracted by TRIzol (Biosharp), and cDNA was reverse-transcribed using HiScript 1st Strand cDNA Synthesis Kit (Vazyme) and real-time PCR using SYBR qPCR Mix (Vazyme). The primer sequences were as follows: β-actin (mouse): 5′-CATTGCTGACAGGATGCAGAAGG-3′ (forward) and 5′-TGCTGGAAGGTGGACAGTGAGG-3′ (reverse); IL-6 (mouse): 5′-TACCACTTCACAAGTCGGAGGC-3′ (forward) and 5′-CTGCAAGTGCATCATCGTTGTTC-3′ (reverse); P53 (mouse): 5′-CCTCAGCATCTTATCCGAGTGG-3′ (forward) and 5′-TGGATGGTGGTACAGTCAGAGC-3′ (reverse); P21 (mouse): 5′-TCGCTGTCTTGCACTCTGGTGT-3′ (forward) and 5′-CCAATCTGCGCTTGGAGTGATAG-3′ (reverse); P27 (mouse): 5′-AGCAGTGTCCAGGGATGAGGAA-3′ (forward) and 5′-TTCTTGGGCGTCTGCTCCACAG-3′ (reverse); and Opg (mouse): 5′-CGGAAACAGAGAAGCCACGCAA-3′ (forward) and 5′-CTGTCCACCAAAACACTCAGCC-3′ (reverse).
+ Open protocol
+ Expand
4

Quantitative RT-PCR Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted with Trizol (Biosharp, Hefei, China), followed by reverse transcription using reverse transcription kit (Roche, Basel, Switzerland). The RT-qPCR assays were performed as reported earlier [53 (link)]. Primer sequences were as follows: ITGB1-F, TGGACAATGTCACCTGGAAA; ITGB1-R, AGCTCCTTGTAAACAGGCTGAA; CTSL-F, AGGAGAGCAGTGTGGGAGAA; CTSL-R, ATCTGGGGGCCTCATAAAAC; GAPDH-F, AAAATGGCAGTGCGTTTAG; GAPDH-R, TTTGAAGGCAGTCTGTCGTA; TFEB-F, CCAGAAGCGAGAGCTCACAGAT; TFEB-R, TGTGATTGTCTTTCTTCTGCCG. The results were analyzed using 2−∆∆Ct method.
+ Open protocol
+ Expand
5

Gene Expression Analysis of Adipogenic Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIzol (Biosharp) according to the product protocol. After examination of RNA purity and concentration, 2 μg RNA was used as a template to reverse transcribe to cDNA by using M-MLV Reverse Transcriptase Kit (Invitrogen). Reverse transcription conditions were under 5 min at 25 °C, 45 min at 50 °C, 5 min at 85 °C. qPCR analysis was performed using the SYBR Green PCR Master Mix (Roche, Basel, Switzerland) with the ABI Step-One PlusTM Real-Time PCR System (Applied Biosystems, Waltham, MA, USA). Relative level of RNA expression was determined with 2−ΔΔCt method after normalization to GAPDH. Reaction conditions were 95 °C for 1 min, 40 cycles of 95 °C for 15 s and 60 °C for 30 s. Primers used in this study were listed in Table 1.

Primer sequences used in this work

NameForward primer (5′→3′)Reverse primer (5′→3′)
ADIPOQTATGATGTCACCACTGGCAAATAGAGGAGCACAGAGCCAGAG
PPARγAGGACTACCAAAGTGCCATCAAAGAGGCTTTATCCCCACAGACAC
CEBPβGCACAGCGACGAGTACAAGATATGCTGCGTCTCCAGGTTG
aP2CAGGAAAGTCAAGAGCACCATGATACATTCCACCACCAA
GAPDHACACTCACTCTTCCACTTTTGCAAATTCATTGTCGTACCAG
+ Open protocol
+ Expand
6

Expression Analysis of RNA-Related Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from peripheral venous blood, HL60, and U937 cells or tissues using TRIzol (BS259A, Biosharp) and then reversely transcribed into cDNA using PrimeScript RT Reagent kit (R223-01, Vazyme). The real-time PCR assay was conducted with SYBR Green Real-Time PCR Master Mix (Q711-02, Vazyme). Actin acted as the control. The primers for UCA1, METTL14, CXCR4, CYP1B1, and β-actin were listed in Supplement Table 1. The relative gene expression was analyzed by the 2−ΔΔCt method.
+ Open protocol
+ Expand
7

Mouse Colon RNA Extraction and qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA was extracted from mouse colon tissues with TRIzol (Biosharp, Hefei, China) reagent according to the instructions. The primers used in the experiment were synthesized by GENEWIZ Biotechnology Co., Ltd. (Suzhou, Jiangsu, China), and their sequences are shown in Table 1. Reverse transcription was performed using the first-strand cDNA Synthesis Kit (TIANGEN, Beijing, China). PCR reagents were prepared according to the instructions of the RT-PCR kit (TIANGEN, Beijing, China). Changes in the fluorescence intensity during PCR were identified and quantified using a fluorescence quantitative PCR instrument (CFX, Bio-Rad, Hercules, CA, USA).
+ Open protocol
+ Expand
8

Quantifying Hippocampal TRPC Ion Channels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from hippocampal tissues with Trizol (Biosharp, China). The Total RNA was reverse transcribed into complementary DNA (cDNA) by using the SuperScript First-Strand Synthesis System for RT-PCR (Invitrogen). The primers used to measure gene expression are the following TRPC1 Forward-CGTGCGACAAGGGTGACTATTAT, Reverse-TGCATCTGCGGACTGACAAC; TRPC3 Forward-ACCCTGCTTTTACCACGGTT, Reverse-GCATGTTGAGCAGAACGACC; TRPC4 Forward-AAACCCCATCGGAACTGACC, Reverse-GCTAGTCCATCATCTCCGCA; TRPC5 Forward-TTTGCCAACGGACTGAACCA, Reverse-GAAGGGTTTCAAAGAGCGTGG; TRPC6 Forward-AAGTGAACGAAGGGGAGCTG, Reverse-ACAGTCTCTCCCCAAGCTTTC; TRPC7 Forward-TCCCTTTAACCTGGTGCCGAGTC, Reverse-TTCAGCATGCCCATTTCCAGG; β-actin Forward-CGGTTCCGATGCCCTGAGGCTCTT, Reverse-CGTCACACTTCATGATGGAATTGA.
+ Open protocol
+ Expand
9

Gene Expression Analysis in Liver, Duodenum, and Adipose

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from liver, duodenum and adipose tissue using Trizol® (Biosharp, Hefei, China) and cDNAs were synthesized using Hifair® III 1st Strand cDNA Synthesis SuperMix for qPCR (Yeasen Biotechnology, Shanghai, China) according to the manufacturer’s instructions (6 mice per group). Real-time PCR was performed using Hief UNICON® qPCR SYBR Green Master Mix (Yeasen Biotechnology, Shanghai, China) and the ABI 7500 real-time PCR system (Thermo Fisher Scientific, Waltham, MA, USA). The primer sequences are listed in Table 1. GAPDH is the reference gene.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!