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Anti atf4

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Anti-ATF4 is a primary antibody product developed by Santa Cruz Biotechnology for research purposes. It is designed to detect and bind to the ATF4 (Activating Transcription Factor 4) protein, which is a transcription factor involved in cellular stress response pathways. This product can be used in various laboratory techniques, such as Western blotting, immunohistochemistry, and immunocytochemistry, to study the expression and localization of the ATF4 protein.

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35 protocols using anti atf4

1

Western Blot Analysis of ATF4 and eIF2α

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Cells were lysed in the lysis buffer containing 50 mM HEPES, 200 mM NaCl, 1% NP-40, 100 mM NaF, 0.5% sodium pyrophosphate, 10% glycerol, and cOmplete protease inhibitor (Roche, Basel, Switzerland). The total cell lysates were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to Immobilon-P PVDF membranes (Millipore, Burlington, MA, USA). The membranes were incubated with anti-ATF4 (Santa Cruz, sc-390063, 1:000), anti-phosho-eIF2α (Cell Signaling Technologies, Danvers, MA, USA, 3298, 1:1000), anti-eIF2α (Cell Signaling Technologies, 5324, 1:1000), and anti-GAPDH (WAKO, 016-25523, 1:5000) antibodies. GAPDH was used as an internal control. After washing, the membranes were incubated with horseradish peroxidase-conjugated mouse IgG (Cell Signaling Technologies, 7076, 1:5000) and rabbit IgG (Cell Signaling Technologies, 7074, 1:5000). The immunoreactive bands were detected by ChemiDoc XRS+ (BioRad) using ImmunoStar LD (WAKO, 290-69904). The intensity of immunoreactive bands was quantified with the Image Lab software (BioRad).
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2

Immunostaining of Organelle Markers

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After treatments, cells were fixed with acetone/methanol (1:1) for 5 min at −20 °C and blocking in 5% BSA in PBS for 30 min. Fixed cells were incubated overnight at 4°C with primary antibody [anti-SDHA (1:500, mouse, Invitrogen), anti-PDI (1:500, rabbit, Stressgen), anti-ATF4 (1:500, rabbit, Santa Cruz Biotechnologies), anti-CHOP (1:500, rabbit, Cell Signaling), anti-cytochrome c (1:500, mouse, BD Transduction Lab.), or anti-COX IV (1:500, mouse, GeneTex)]diluted in PBS and then washed three times in PBS and incubated for 1 h at room temperature with anti-rabbit or anti-mouse Alexa Fluor 488 or 594 (1:1000, Molecular Probes). Slides were mounted with ProLong Gold antifade mounting reagent (Molecular probes) and cell staining was visualized with a fluorescence microscope using Zeiss filter sets #46 and #64HE.
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3

Quantifying Cellular Stress Response Proteins

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Lung homogenates or cell lysates were subjected to denaturating SDS-PAGE, followed by electroblotting and immunoblotting for anti-ATF4, anti-GRP78, anti-CHOP (Santa Cruz Biotechnology, Dallas, TX), anti-ATF6α, anti-IRE1 (Enzo Life Sciences, Farmingdale, USA), anti-XBP-1 (Novus Biologicals, Littleton, CO), anti-eIF2α, anti-phospho eIF2α, anti-phospho PERK, anti-PERK, anti-phospho AKT(Thr308), anti-phospho p70S6K (Cell Signaling Technology, Danvers, MA) or anti-phospho IRE1 (Abcam, Cambridge, MA). Blots were developed using corresponding HRP-conjugated secondary antibodies and detected using a chemiluminescent system (Amersham ECL Plus; GE Healthcare, Piscataway, NJ). Band intensities were quantified with a LAS-1000 plus system (Fuji Film, Japan).
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4

Monitoring UPR Pathway Activation

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Total cell extracts or nuclear extracts were separated by SDS-PAGE and transferred to PVDF membranes. IRE1α phosphorylation was monitored by Phos-tag SDS-PAGE. PERK phosphorylation was monitored by 5% SDS-PAGE. The following antibodies were used for immunoblot analysis: anti-XBP1s (BioLegend, 619502); anti-PERK (Cell signaling, #5683); anti-IRE1α (Cell Signaling, #3294); anti-ATF6 (Cosmo bio, BAM-73-500-EX); anti-ATF4 (Santa Cruz, sc-200); anti-Hsp90 (Santa Cruz, sc-7947), anti-TBP (Abcam, 51841); anti-EIF2α (Santa Cruz, sc-11386); anti-phospho-EIF2α (Cell Signaling, #9721).
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5

Insulin Signaling Pathway Analysis

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Anti-hnRNP A1, anti-ATF4, anti-CHOP, anti-Akt, anti-IRS-1, anti-Tubulin, and anti-GLUT4 were purchased from Santa Cruz. Anti-phospho-eIF2 (Ser51), anti-fatty acid synthase, anti-IR, anti-phospho-IR (Y1105/1151) anti-phospho-IRS-1 (Y986), anti-phospho-Akt (Ser473), anti-phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204), anti-p44/42 MAPK (Erk1/2), anti-phospho-AMPKα (Thr172), anti-AMPKα, anti-phospho-Akt (Ser473), anti-phospho-IR (Y1105/1151), anti-IR, anti-GSK-3β (3D10), anti-GS, and anti-p-GS (Ser641) were purchased from Cell Signaling Technology. Anti-phospho-GSK-3β (Ser9) was purchased from Epitomics. Anti-Lamin B1 was purchased from Proteintech Group. Anti-Actin and anti-GAPDH were purchased from Abmart. Insulin was purchased from Wepon. 2-NBDG (2-(N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl) Amino)-2-deoxyglucose) was purchased from Thermo Scientific. The siRNA-hnRNP A1 (m) and siRNA-Ctrl were purchased from Santa Cruz. TG test kit, Glu test kit, TC test kit, ALT, and AST test kits were purchased from Nanjing Jiancheng Bioengineering Institute. Insulin ELISA kit was purchased from ALPCO.
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6

Western Blot Analysis of Stress Response

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OPCs were washed twice with PBS and lysed in ice-cold RIPA buffer (Sigma) containing Halt Protease and Phosphatase Inhibitor Cocktail (Thermo Fisher Scientific, PI78441). Lysates were then centrifuged at 12,000 rpm for 20 min at 4°C. A total 20 µg of protein lysates was separated by 4–12% SDS-PAGE (Bio-Rad, 4561095) and transferred to a nitrocellulose membrane. The following primary antibodies were used: anti-p-eIF2α (Abcam, ab32157, 1:2000), anti-T-eIF2α (Cell Signaling, 9722s, 1:1000), anti-puromycin (Millipore, MABE343, 1:2000), anti-BIP (Cell Signaling, 3177s, 1:1000), anti-GADD34 (Proteintech, 10449–1-AP, 1:500), anti-ATF4 (Santa Cruz, sc-390063, 1:500), anti-CHOP (Thermo Fisher, MAI-250, 1:500), anti-XBP-1-spliced (Cell Signaling, 82914s, 1:1000), and anti-actin (Sigma, A2066, 1:2000). Quantification of Western blot bands were performed by Image Lab Software (Bio-Rad).
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7

Natural Product Library Cytotoxicity Screening

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The natural product library was provided by Korea Institute of Science and Technology (KIST; Gangneung, Korea). The extract library was composed of ethanolic extracts of Korean native plants. MTT (tetrazolium bromide), dimethyl sulfoxide (DMSO), and N-Acetyl-L-Cysteine (NAC) were purchased from Sigma (St. Louis, MO). 2′,7′-Dichlorofluorescein diacetate (DCF-DA) was purchased from Molecular Probes (Eugene, OR). The TNF-α was purchased from Peprotech (Rocky Hill, NJ). The anti-PARP-1, anti-ATF4, anti-caspase-7, anti-actin, and anti-GAPDH antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). The anti-CHOP, anti-phospho-NF-κB, anti-NF-κB, anti-IL-1β, anti-phospho-p38, anti-p38, anti-phospho-JNK, anti-JNK, anti-phospho-eIF2α, anti-eIF2α, and horseradish peroxidase-conjugated secondary antibodies were purchased from Cell Signaling Technology (Beverly, MA). Annexin V-flamma 488 was purchased from Bioacts (Korea). Hoechst 33342 was purchased from Invitrogen (CA).
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8

Protein Expression Analysis in Ovarian Tissue

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Total protein was extracted from ovarian tissues, mixed with sodium dodecyl sulfate (SDS) sample buffer, and then boiled for 10 mins. For protein analyses, 30 μg of protein from each sample was loaded onto an SDS polyacrylamide gel for electrophoresis and subsequently transferred onto polyvinylidene fluoride membranes. The membranes were blocked in 5% skim milk for 60 mins at room temperature before incubation overnight at 4°C with the following primary antibodies: anti-ATF4 (1:1,000, Santa Cruz, USA, RRID: AB_2058752), anti-COX2 (1:1,000, Proteintech, China, RRID: AB_2085127), and anti-GAPDH (1:5,000, Abcam, USA, RRID: AB_2107448). The samples were then incubated for 90 mins at room temperature with secondary antibodies (1:5,000, Cell Signaling, USA). Chemiluminescence reagent (Thermo Fisher Scientific, USA) was used to visualize the blots. The representative blots were obtained from three independent experiments.
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9

Western Blotting Protocol for Cell Signaling

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Western blotting was performed according to standard procedures. We used the following primary antibodies: anti-HOOK1 (Abcam, ab151756), anti-CASP3 (Cell Signaling, #9664), anti-CASP9 (Cell Signaling, #9502), anti-PARP (Cell Signaling, #9532), anti-p-H2AX (Ser139) (Cell Signaling, #9718), anti-NANOG (Santa Cruz Biotechnology, sc-293,121), anti-OCT3/4 (Santa Cruz Biotechnology, sc-5279), anti-KLF4 (Abcam, ab72543), anti-ATF6α (Santa Cruz Biotechnology, sc-166,659), anti-ATF4 (Santa Cruz Biotechnology, sc-390,063), anti-GRP78 (Santa Cruz Biotechnology, sc-13,539), anti-CHOP (Cell Signaling, #2895), anti-LC3B (Abcam, ab48394), anti-p62 (Abcam, ab109012), and anti-B-actin (Abcam, ab16039) as a loading control. We used the following secondary antibodies: rabbit anti-mouse (Abcam, ab97046) and goat anti-rabbit (Abcam, ab97051). The proteins were detected using an ECL detection system (Amersham Biosciences) and a Bio-Rad Chemidoc Touch.
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10

Characterization of Protein Interactions

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The following antibodies and chemicals were purchased: anti- Cullin-4B, anti-FLAG (M2), and anti-α-tubulin antibodies, mouse IgG-agarose, monoclonal anti-HA-agarose, and anti-FLAG M2 affinity gel from Sigma-Aldrich Co. (St. Louis, MO); anti-caspase-3, anti-caspase-9, anti-cleaved caspase-3, and anti-cleaved caspase-7 antibodies from Cell Signaling Technology (Beverly, MA); anti-Apaf-1 antibody from Millipore (Temecula, CA) and Abcam (Cambridge, United Kingdom); anti-multi ubiquitin antibody (FK2) from Medical and Biological Laboratories Co., Ltd. (Nagoya, Japan); anti-p62 (C-terminal) antibody (specific to amino acids 421–440 of human p62 protein) from PROGEN Biotechnik GmbH (Heidelberg, Germany); anti-HA (HA.11 and Y-11) and anti-myc antibodies from Covance (Richmond, CA) and Santa Cruz Biotechnology (Santa Cruz, CA); and anti-ATF4, anti-REST, and anti-Bcl-xS/L antibodies from Santa Cruz Biotechnology. HRP-conjugated anti-rat, anti-mouse, anti-rabbit, and anti-guinea pig IgG (H + L) antibodies were purchased from Southern Biotech (Birmingham, AL); MG132 from Calbiochem (La Jolla, CA); etoposide, E64d, pepstatin A, and cycloheximide from Sigma-Aldrich Co. All other chemicals were purchased from Wako Pure Chemical Industries (Osaka, Japan), Kanto Chemical (Tokyo, Japan), and Sigma-Aldrich Co.
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