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39 protocols using nf κb p65

1

Immunofluorescence Assay of C. sakazakii

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Immunofluorescence assays were performed according to a previous study with some modifications (Mu et al., 2014 (link)). For bacterial visualization, a GFP-labeled plasmid pCA66-GFP was electrotransformated into C. sakazakii ATCC 29544. The plasmid did not affect the invasion abilities of the strain (data not shown). HBMEC were propagated on round glass coverslips within 24-well plates to 70–90% confluence and infected with GFP-labeled C. sakazakii (MOI = 100). After infection for 0, 1, 2, 3, and 4 h, the cells were washed with PBS and fixed with 4% paraformaldehyde at 4°C for 1 h. After blocking with QuickBlockTM Blocking Buffer (Beyotime, Shanghai, China) for 20 min at room temperature, the samples were incubated with the 1:100 dilutions of primary antibodies of CD44 (Proteintech, Wuhan, China), Rab5 (Beyotime), Rab7 (Beyotime), LAMP2 (Beyotime), Cathepsin L (Proteintech), and NF-κB p65 (Proteintech) at 4°C overnight. Cy-3 labeled secondary antibodies were used at a 1:500 dilution at room temperature. Samples on the slides were washed with PBS and mounted onto microscope slides with antifade reagent with DAPI (Beyotime). The images of protein expression and distribution in HBMEC were obtained with confocal laser scanning microscopy (Revolution-XD, Andor, England).
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2

Western Blot Analysis of Signaling Pathways

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For western blotting, cell lysis buffer for western and IP (Bestbio, Shanghai, China) was used to prepare J774A.1 cell proteins. The protein concentrations of J774A.1 were quantified using the bicinchoninic acid (BCA) assay (Thermo Fisher Scientific Inc, Waltham, MA, USA). The samples of J774A.1 proteins was adjusted to a concentration of 30~50 μg perwell. After electrophoresis, protein samples were transferred to a polyvinylidene difluoride membrane that was blocked with 5% milk in TBS-T (TBS containing 0.05% Tween 20) for 1 h at room temperature. After washing the membrane with TBS-T, it was incubated with the specific antibodies against p-ERK (proteintech, Chicago, IL, USA), ERK (proteintech, USA), p-p38 (CST, Danvers, MA, USA), p38 (proteintech, Chicago, IL, USA), p-JNK (proteintech, Chicago, IL, USA), JNK (proteintech, Chicago, IL, USA), p-NF-κB p65 (CST, USA), NF-κB p65 (proteintech, Chicago, IL, USA), β-actin (proteintech, Chicago, IL, USA), or VapA (ABclonal, Wuhan, China) in dilution 1:1000 at 4 °C overnight. The membrane was washed with TBS-T and incubated with horseradish peroxidase-conjugated secondary antibodies for 1 h. Membrane was then washed thoroughly with TBS-T before the addition of a chemiluminescent substrate and exposure.
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3

Immunohistochemical Analysis of Cartilage Biomarkers

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Tissue sections were dewaxed, rehydrated, and performed heat-mediated antigen retrieval. The sections were incubated at 4°C overnight with primary antibodies against COL2A1, ACAN, MMP13, TNFα (1 : 100, Abcam), p-PI3K (1 : 100, Cell Signaling Technology), NF-κB p65 (1 : 250, Proteintech), p16 (1 : 250, Bioss), and IL6 (1 : 200, Abcam). Then, the sections were incubated with HRP-conjugated secondary antibody, and the signal was developed with 3,3′-diaminobenzidine. The images were captured with a microscope (Leica DMI4000B, Wetzlar, Germany). Image-Pro Plus version 6.0 (Media Cybernetics, Inc., Rockville, MD, USA) was used to evaluate the dyed area and the integrated optical density (IOD), and mean density equaled the IOD value divided by area. The calculation was executed by two observers blinded to the experimental design.
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4

Protein Expression Analysis in Gingival Tissue

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The gingival tissue was lysed with a RIPA lysis buffer supplemented with 1 mM PMSF. Then, samples were centrifuged at 12,000 rpm at 4 °C for 15 min in three freezing-melting cycles. Equal amounts of protein samples were separated by SDS-polyacrylamide gel electrophoresis and transferred onto a PVDF membrane by electro-blotting. The membranes were blocked with 5% BSA dissolved in Tris-buffered saline containing Tween (TBST), then incubated with primary antibodies at 4 °C overnight, including LC3B (1:1000), p62/SQSTM1 (GeneTex, America, GTX636328, 1:2000), NFκB-p65 (1:1000), GAPDH (Proteintech, China, 10494-1, 1:2000) and LL-37 (1:1000) at 4 °C. Membranes were incubated with a secondary antibody (Abbkine, America, A23220, 1:1000) in the dark for 1 h at 37 °C. Images were obtained using the Infrared Fluorescence Scanning Imaging System (Odyssey CLx, LI-COR, USA).
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5

Western Blot Analysis of TRPV1, NF-κB p65

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Protein concentration was quantified using a BCA kit (Beyotime, China). Equivalent amounts of protein were separated by 12% SDS-PAGE and then transferred onto PVDF membranes. The membrane was blocked by 5% BSA in TBST for 1 h. The membrane was incubated with primary antibodies against TRPV1 (1 : 1,000, Abcam, UK), NF-κB p65 (1 : 1,000, Proteintech, China), and anti-β-actin (1 : 2,000, ImmunoWay, USA) at 4°C overnight. After washing, membranes were incubated with HRP-coupled secondary antibodies (1 : 2,000, Zhongshan Golden Bridge, China). After washing with TBST, immunoblots were visualized with ECL-Plus kit (Beyotime, China). Grey values of immunoreactive bands were normalized to β-actin in each sample.
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6

Immunohistochemical Analysis of TRPV1 and NF-κB

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The colon tissue sections were washed 3 times with PBS. Citric acid (pH = 6.0) was used for antigen repair for 5 min. Sections were blocked with 10% normal goat serum for 30 min and incubated with the antibodies against TRPV1 (1 : 100, Abcam, UK) and NF-κB p65 (1 : 200, Proteintech, China) at 4°C overnight. Subsequently, the sections were incubated with the CY3-labeled goat anti-mouse secondary antibody (1 : 800, Proteintech, China) and FITC-labeled goat anti-rabbit secondary antibody (1 : 400, Proteintech, China) for 1 h, and nucleus was stained with DAPI.
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7

Investigating Inflammatory Pathway Activation in I/R and OGD/R

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Proteins were extracted from brain tissue at different time periods (24 h, 48 h and 72 h) after I/R and from PC12 cells 24 h after OGD/R. Protein concentration was determined and western blotting was performed according to previous methods [44 (link)]. The primary antibodies used included IL-1β (1:2000), TNF-α (1:1000), IKKβ (1:1 000), NF-κB p65 (1:2000), I-κB (1:2000) (Proteintech, Hubei, China), p-NF-κB p65 (1:1000), and p-I-κB (1:1000) (Cell Signaling Technology, MA, USA). Horseradish peroxidase (HRP)-conjugated secondary antibodies (1:10,000; (Proteintech, Hubei, China)) were also used. Band signals were visualized and exposed using an enhanced chemiluminescence kit (Biosharp Life Science, Anhui, China). Results were assessed using ImageJ software.
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8

Western Blot Analysis of Rat Lung and Liver

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The protein samples of randomly 3 individual rat lung and liver tissues were loaded and resolved using 8, 10, or 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and then, the proteins were transferred to nitrocellulose membranes for 1 h, and at the solution of 5% skimmed milk, the membranes were blocked for an additional 1 h at 37°C. After that, they were incubated with the primary antibody overnight at 4°C: Cox-2, IL-1β, IL-6, TNFR-2, caspase-3, caspase-9, Bcl-2, Bax, p53, NF-κB p65, NF-κB p50, IK-α, and IKKβ (Proteintech, Wuhan, Hubei, China). Then, the membranes were washed in Tween-20 and Tris-buffered saline (T-TBS)/3 times and incubated at 37°C in secondary antibody (Proteintech, Wuhan, Hubei, China) for 1 h. Enhanced chemiluminescent (ECL) solution (Proteintech, Wuhan, Hubei, China) was used to visualize the membranes. And proteins were quantified by using Image Lab software (Bio-Rad, CA, USA) for 3 independent experiments. β-Actin was the corresponding expression of normalization [39 (link), 40 (link)].
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9

Quantitative Analysis of Lung Protein Markers

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The concentration of total proteins in lung tissues was tested using a BCA kit. Next, 40 μg of protein samples was dissolved in an equal volume of loading buffer and was then separated by 10% SDS-PAGE and transferred onto PVDF membranes. After blocking with TBST containing 5% nonfat milk for 1 h at room temperature, the membranes were incubated with primary antibodies at 4°C overnight. The primary antibodies used were TLR4, CD14, MyD88, p-NF-κB p65, NF-κB p65, and GAPDH, respectively (Proteintech Group, Rosemont, IL, USA; Cell Signaling Technology, Beverly, MA, USA). Next, the membranes were washed in TBST and incubated with secondary antibodies for 1.5 h at room temperature. Finally, the signals of the target proteins were detected, and target bands were exposed by chemiluminescence and quantified using ImageJ software.
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10

Quantifying NF-κB Signaling in Gastric Tissue

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The gastric tissues were hand-homogenized in liquid N2 and the total proteins were extracted by a cold lysis buffer with protease and phosphatase inhibitors (Beyotime, Shanghai, China). The protein content was measured using a BCA Protein Assay Kit (Beyotime). Proteins were separated by 12% sodium dodecyl sulfate–polyacrylamide gels and then transferred onto a PVDF membrane. The membrane was blocked for 2 h with 3% bovine serum albumin in TBST buffer (Tris-buffered saline and 0.1% Tween 20) at room temperature and then incubated overnight with primary antibodies against either β-actin, NF-κB p-65 (Proteintech, Chicago, USA), or NF-κB p-p65 (Arigo, Hsinchu City, China) at 4°C and subsequently with secondary antibody HRP-conjugated goat anti-rat IgG H&L (Proteintech) for 2 h. Specific bands were detected using a chemiluminescent Western blot imaging system (Azure, Dublin, USA).
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