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Model ix71

Manufactured by Olympus
Sourced in Japan, Germany

The Olympus Model IX71 is an inverted microscope designed for use in cell culture and live-cell imaging applications. It features bright-field, phase-contrast, and fluorescence observation modes, allowing for a wide range of sample types to be examined. The IX71 is equipped with a motorized stage and focus control, enabling precise sample positioning and focus adjustments.

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28 protocols using model ix71

1

Cell Migration Assay Using Boyden Chamber

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Cell migration assays were carried out by a Neuro Probe 48-well chemotaxis Boyden chamber (Cabin John, MD) as described previously [8 (link)]. Briefly, 5 × 104 cells were trypsinized and resuspended in DMEM including 0.2% FBS and then added to each upper well. Cells were allowed to migrate toward fibronectin (10 μg/ml) in DMEM as the chemoattractant or DMEM only as a control in the lower wells for 7 hr in a 37°C humidified 5% CO2 incubator. At the end of the experiments, cells on the upper side of the polycarbonate membrane were removed, and the bottom-side cells were fixed in methanol for 10 min and stained with crystal violet (Sigma-Aldrich, St Louis, MO). The migrated cells were counted in four randomly selected fields of each well under a light microscope (Model IX71, Olympus, Japan) using a 20× objective lens.
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2

Visualizing Cytoskeleton and Integrin Expression

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Treated cells were fixed and permeabilized with 0.1% Triton x-100 for 5 min at room temperature and then incubated with Alexa Fluor 488- labeled Phalloidin (A12379, Molecular Probs, Inc, OR, USA) and PE-conjugated αvβ3 antibody (LM609, Chemicon International). Hoechst 33342 was used for nuclear staining (Sigma-Aldrich). Cells were visualized by a fluorescent microscopy equipped with a camera (Model IX71, Olympus, Hamburg, Germany) with a 20X/0.50 objective lens and Cell^A (Version 3.1) Olympus software imaging.
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3

Immunofluorescence Staining of Cellular Proteins

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Cells were adhered to coverslips and then treated with PEME buffer containing 1% NP-40 for 5 min. The following antibodies were used: FITC-conjugated anti-HA monoclonal antibody (Clone HA-7, 1:400 dilution), anti-HA monoclonal antibody (clone HA-7, 1:400 dilution), and anti-Protein A polyclonal antibody (1:400 dilution). All three antibodies were purchased from Sigma-Aldrich. Cells were incubated with primary antibodies at room temperature for 1 h, and then washed three times with PBS containing 0.1% Triton X-100. For anti-HA and anti-Protein A staining, cells were then incubated with Cy3-conjugated anti-mouse IgG or FITC-conjugated anti-rabbit IgG (Sigma-Aldrich, 1:400 dilution) at room temperature for 1 h. The slides were mounted in VectaShield mounting medium (Vector Labs) containing DAPI and examined using an inverted microscope (Model IX71, Olympus) equipped with a cooled CCD camera (model Orca-ER, Hamamatsu) and a PlanApo N 60× 1.42-NA DIC objective. Images were acquired and processed using the Slidebook5 software (Intelligent Imaging Innovations, Inc).
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4

Scratch Assay for Cell Migration

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CAG cells were seeded (100,000 cells/96-well plate) and starved for 48 h in serum-free media. Each well was scratched in the middle and T3 (1 nM) or T4 (100 nM) were added for 0, 24, 48, 72 and 96 h. Cells were visualized by light and florescent microscopy equipped with a camera (Model IX71, Olympus, Hamburg, Germany) with a 20X/0.50 objective lens and Cell^A (Version 3.1) Olympus software imaging at each time point. After 96 h, cells were fixed with 4% paraformaldehyde and permeabilized with 0.2% Triton x-100 for 5 min. 1% BSA was used for blocking, followed by Hoechst and Phalloidin staining.
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5

Quantifying Cell Adhesion: Fibronectin and RGD Assays

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For adhesion assays 96-well plates were pre-coated for 30 minutes with fibronectin (15 μg/mL), RGD (2.5 μg/mL) or BSA (10 μg/mL), washed twice with PBS and blocked for 30 minutes in BSA (2mg/mL). CAG cells were seeded (100,000 cells/24-well plate) under serum-free conditions for 24 hours before the addition of T3 (1 nM) or T4 (100 nM) for an overnight incubation. Afterwards cells were collected, counted and an equal number of cells were re-seeded for 30 minutes in 37º C in the pre-coated plates (50,000/96-well plate). Unattached cells were washed twice with PBS and adhered cells were stained with Hoechst 33342. Cells were visualized by a florescent microscopy equipped with a camera (Model IX71, Olympus, Hamburg, Germany) with a 20X/0.50 objective lens and Cell^A (Version 3.1) Olympus software imaging.
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6

Cytotoxicity Assessment of Tendon Tissues

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Contact cytotoxicity assays were used to evaluate the biocompatibility of the 6 QA tendon halves as previously described [26 (link)]. Murine L929 fibroblasts and Baby Hamster kidney (BHK) cells were cultured in contact with samples (approximately 2 × 2 × 5 mm) of tendon from each tissue region, which were attached to the bottom of six well plates using Steri-Strip™ (3 M). A drop of cyanoacrylate contact adhesive served as the positive control for cytotoxicity and Steri-Strip (3 M; 10 × 3 mm) as the negative control. Two plates were created for each tendon, containing ankle, middle and toe regions of tissue, and cell only, positive and negative controls. The tissues and controls were incubated with L929 and BHK cells in an atmosphere of 5% (v/v) CO2 in air at 37 °C for 48 h. Samples were viewed using phase contrast microscopy on an inverted microscope (Olympus UK, model IX71) and images of each sample were captured digitally.
Cell monolayers were fixed in 10% (v/v) NBF for 10 min prior to staining with Giemsa stain. After rinsing off excess dye, samples were imaged again under bright field microscopy. The tissues were judged to be biocompatible if the cells grew up to and in contact with the edge of the samples.
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7

Immunofluorescence Staining of Cellular Proteins

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Cells were adhered to coverslips and then treated with PEME buffer containing 1% NP-40 for 5 min. The following antibodies were used: FITC-conjugated anti-HA monoclonal antibody (Clone HA-7, 1:400 dilution), anti-HA monoclonal antibody (clone HA-7, 1:400 dilution), and anti-Protein A polyclonal antibody (1:400 dilution). All three antibodies were purchased from Sigma-Aldrich. Cells were incubated with primary antibodies at room temperature for 1 h, and then washed three times with PBS containing 0.1% Triton X-100. For anti-HA and anti-Protein A staining, cells were then incubated with Cy3-conjugated anti-mouse IgG or FITC-conjugated anti-rabbit IgG (Sigma-Aldrich, 1:400 dilution) at room temperature for 1 h. The slides were mounted in VectaShield mounting medium (Vector Labs) containing DAPI and examined using an inverted microscope (Model IX71, Olympus) equipped with a cooled CCD camera (model Orca-ER, Hamamatsu) and a PlanApo N 60× 1.42-NA DIC objective. Images were acquired and processed using the Slidebook5 software (Intelligent Imaging Innovations, Inc).
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8

Immunofluorescence Staining of CIF Proteins

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Cells were adhered to glass coverslips, treated with PEME buffer for 5 min at room temperature, and then fixed with 4% paraformaldehyde for 10 min at room temperature. Cells were washed once with PBS, incubated with the blocking buffer (3% BSA in PBS) for 1 h at room temperature, and then incubated with the primary antibody for 1 h at room temperature. The following primary antibodies were used: anti-CIF1 polyclonal antibody (1:1,000 dilution) (Zhou et al., 2018a (link)), anti-CIF2 polyclonal antibody (1: 1,000 dilution) (Zhang et al., 2019 (link)), anti-Protein A (anti-ProtA) polyclonal antibody (1:400 dilution) (Sigma-Aldrich), and FITC-conjugated anti-HA antibody (1:400 dilution) (Sigma-Aldrich). Cells were washed three times with PBS containing 0.1% Triton X-100. Except for the FITC-conjugated anti-HA antibody, cells were subsequently incubated with Cy3-conjugated anti-rabbit IgG at room temperature for 1 h. The slides were mounted in VectaShield mounting medium (Vector Labs) containing DAPI and examined using an inverted microscope (Model IX71, Olympus) equipped with a cooled CCD camera (model Orca-ER, Hamamatsu) and a PlanApo N 60 × 1.42-NA DIC objective. Images were acquired and processed using the Slidebook5 software (Intelligent Imaging Innovations, Inc).
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9

Quantitative Vascular Morphometry Analysis

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Injured arteries were collected for morphometric analysis following perfusion fixation with PBS and 4% paraformaldehyde. Three serial cross-sections taken from the proximal end of the paraffin-embedded femoral arteries at 0.5-mm intervals were stained with Elastica van Gieson (EVG), and the average of three serial cross-sections was used as a single data point. The sections were digitized using an inverted microscope (Model IX71, Olympus, Shinjyuku, Tokyo, Japan) and analyzed using Image J software (National Institutes of Health, Bethesda, MD, USA) by an investigator blinded to the treatment. The areas within the internal elastic lamina and the external laminal perimeter were defined as the neointima and the artery perimeter. Arteries completely occluded by the thrombus were excluded from analysis (Additional file 1: Figure S1a–c). Sections showing the following features were also excluded from analysis (Additional file 1: Figure S1d–f): broken wall structure, a branch of another artery, and missing elastic lamina. The percentage of excluded arteries and sections in each treatment group was approximately 10–20 and 15–25%, respectively. Fisher’s exact test revealed no difference between the groups.
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10

Transfection of HEK-293T cells for P2Y receptor studies

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Experiments were performed on human embryonic kidney 293T cells (hereafter HEK-293T cells; American Type Culture Collection, Rockville, MD, USA) grown in Dulbecco modified Eagle's medium supplemented with 10% fetal bovine serum, 50 U/ml penicillin and 50 μg/ml streptomycin in a humidified 5% CO2 atmosphere at 37 °C. These cells express endogenously several subtypes of metabotropic P2Y receptors [29 (link),8 (link),6 (link)], but not P2X4R [38 (link)]. Cells were cultured in 75 cm2 plastic culture flasks (NUNC, Rochester, NY) for 36–72 h, until they reached 80–95% confluence. Before the day of transfection, ~150,000 cells were plated on 35 mm culture dishes (Sarstedt, Newton, NC) and incubated at 37 °C for at least 24 h. For each culture dish of HEK-293T cells, transfection of either wild type or mutant receptors was conducted using 2 μg of DNA with 2 μl of jetPRIME™ reagent in 2 ml of Dulbecco modified Eagle's medium, according to the manufacturer's instructions (PolyPlus-transfection, Illkirch, France). After 24–48 h of incubation, the transfected cells were mechanically dispersed and re-cultured on 35 mm dishes of Corning 3294 CellBIND Surface for 2 – 8 hours before recording. Transfected cells were identified by the fluorescence signal of GFP using an inverted research microscope with fluorescence illuminators (Model IX71; Olympus, Melville, NY).
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