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Na azide

Manufactured by Merck Group
Sourced in United States, Germany

Sodium Azide (Na Azide) is a chemical compound that is commonly used as a laboratory reagent. It is a white crystalline solid that is soluble in water and organic solvents. The core function of Na Azide is as a preservative and antimicrobial agent in various laboratory applications.

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15 protocols using na azide

1

Quantifying GLUT4 Translocation in Muscle Fibers

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GLUT4 translocation was measured as recently described43 (link). Briefly, rapidly dissected TA muscles were fixed by immersion in ice-cold 4% in paraformaldehyde in PBS for 4 h. TA muscles were transferred to a Sylgaard dish and isolated into smaller bundles using fine forceps. The bundles were transferred to a storage solution containing PBS and glycerol (1:1) and kept at 4 °C overnight. Individual fibers were teased from fixed muscle with fine forceps under a dissection microscope. Non-permeabilized isolated muscle fibers were incubated in blocking buffer (1% BSA, 5% goat serum (16210-064, Gibco), 0.1% Na Azide (247-852, Merck) for 1 h and then incubated with an anti-myc antibody overnight (Supplementary Table I). The next day, fibers were then washed 3 × 10 min in PBS containing 0.04% saponin and incubated with Alexa 568 antibody (Supplementary Table I) in blocking buffer containing 0.04% saponin for 120 min Individual muscle fibers were transferred to mounting media (H-1000; Vector Laboratories) on a glass slide and covered by a coverslip. A minimum of 10 transfected fibers were blindly imaged from each muscle (a total of 60 fibers) using a ×63 1.4 NA Plan-Apochromat objective on a Zeiss 780 microscope driven by Zeiss Zen Black 2012. Image analysis is described in the image analysis sections and as previously described43 (link).
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2

Immunofluorescence of Muscle Fiber Proteins

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Human fiber bundles were teased into individual fibers and transferred to wells in a 24-well plate containing PBS using fine forceps. FDB fibers were similarly incubated in PBS. Fibers were washed 3 × 10 min in PBS and incubated in blocking buffer 1% bovine serum albumin (Merck), 5% goat serum (16210-064, Gibco), 0.1% Na Azide (247-852, Merck), 0.04% Saponin (27534-187, VWR) for 1 hr. The muscle fibers were then incubated in blocking buffer containing primary antibodies overnight at 4°. The next day, the fibers were washed 3 × 10 min in PBS containing 0.04% Saponin and incubated in blocking buffer with Alexa 488 anti-rabbit or Alexa 568 anti-rabbit or anti mouse (Invitrogen) for 2 hr. Finally, the fibers were washed 3 × 10 min in PBS and mounted on glass slides in Vectashield (H-1000, Vector Laboratories) or imaged directly from the glass bottom dish. The following antibodies were used, raised in rabbit: GLUT4 (PA5-23052, Invitrogen), detyrosinated α-tubulin (AB48389, Abcam), Syntaxin6 (110 062, Synaptic Systems), or in mouse: GLUT4 (MAB8654, R&D Systems), α-tubulin (T9026, Merck).
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3

Immunofluorescence Staining of Mouse Retina

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Primary and secondary antibodies are listed in S1 Table. At desired stage of development, mouse eyes were collected and fixed 5 h in ice-cold 2% paraformaldehyde (PFA) in PBS for 5 h at 4°C. Thereafter retinas were dissected in PBS. Blocking/permeabilisation was performed using Claudio’s Blocking Buffer (CBB), consisting of 1% FBS (Gibco), 3% BSA (Sigma), 0.5% triton X100 (Sigma), 0.01% Na deoxycholate (Sigma), 0,02% Na Azide (Sigma) in PBS pH = 7.4 for 2–4 h at 4°C on a rocking platform. Primary and secondary antibodies were incubated at the desired concentration in 1:1 CBB:PBS at 4°C overnight in a rocking platform. When using two rabbit primary antibodies, such for Erg and Golph4 immunofluorescence images in Figs 3, 5, S4, and S5, after first incubation with Erg primary and corresponding secondary, an additional step of incubation with donkey anti-rabbit Fab fragments (1:100, Jackson’s Laboratories) followed by 15 min fixation with 4% PFA was performed prior the incubation with Golph4 primary antibodies, in order to avoid intensive cross-reaction between the two primary antibodies. DAPI (Sigma) was used for nuclei labeling. Retinas were mounted on slides using Vectashield mounting medium (Vector Labs, H-1000). For imaging we used a Carl Zeiss LSM780 scanning confocal microscope.
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4

Retinal Immunostaining Protocol

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Eyes were collected from P5 onwards and fixed with 2% PFA in PBS for 5 hr at 4°C, thereafter retinas were dissected in PBS. Blocking/permeabilisation was performed using Claudio’s Blocking Buffer (CBB) (Franco et al., 2013 (link)), consisting of 1% FBS (Thermo Fisher Scientific), 3% BSA (Sigma), 0.5% triton X100 (Sigma), 0.01% Na deoxycholate (Sigma), 0,02% Na Azide (Sigma) in PBS pH = 7.4 for 2–4 hr at 4°C on a rocking platform. Primary and secondary antibodies were incubated at the desired concentration in 1:1 CBB:PBS at 4°C overnight in a rocking platform. A list of primary and corresponding secondary antibodies can be found in Supplementary file 1. Dapi (Sigma) was used for nuclei labeling. Retinas were mounted on slides using Vectashield mounting medium (Vector Labs, H-1000, Burlingame, CA). For imaging we used a Carl Zeiss LSM780 scanning confocal microscope (Zeiss, Germany).
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5

Visualizing Reactive Oxygen Species in Plants

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To visualize H2O2 localization, leaves from all the treatments were immersed in a 1% solution of 3,3'-diaminobenzidine (DAB) (Sigma-Aldrich, St. Louis, MO, USA) in Tris-HCl buffer (pH 6.5), vacuum-infiltrated for 5 min placed in closed vacuum jar attached with suction pump to apply and release vacuum. After vacuum infiltration leaves were incubated at room temperature (25°C) for 2–3 h in the absence of light. Leaves were illuminated until the appearance of brown spots characteristic of the reaction of DAB (Sigma-Aldrich, St. Louis, MO, USA) with H2O2 (hydrogen peroxide). Leaves were bleached by immersing in boiling ethanol to visualize the brown spots and were photographed with a digital camera (Nikon, Japan) at a default setting of 600 dpi.
For the visualization of O2−1, leaves were immersed in a 0.1% solution of nitro blue tetrazolium (NBT) (Sigma-Aldrich, St. Louis, MO, USA) in K-phosphate buffer (pH 6.4), containing 10 mM Na-azide (Sigma-Aldrich, St. Louis, MO, USA), and were vacuum-infiltrated for 5 min placed in closed vacuum jar attached with suction pump to apply and release vacuum. After vacuum infiltration leaves were illuminated until the appearance of dark blue spots (characteristic of blue formazan precipitate). After bleaching in boiling ethanol, the leaf samples were photographed as described above.
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6

Flow Cytometric Analysis of PLC Cells

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Flow cytometric evaluation of PLC-mcoET3 was performed by staining 105 cells per tube in 50 μL of BD Horizon Brilliant Stain Buffer with 10 μL of directly conjugated antibodies against CD61/Alexa Fluor 488, CD49a/PE, CD49e/BB700, and Integrin αvβ5/Alexa Fluor 647 (Becton Dickinson Biosciences, San Jose, CA, United States). Cells were washed with PBS with 0.1% Na Azide (Sigma-Aldrich, St. Louis, MO, United States) and centrifuged for 5 min at 1,500 rpm. The cells were resuspended in 500 μl of 1% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA, United States) in PBS. Background fluorescence was set using non-specific isotype-matched antibodies with respective fluorochromes. Cells were analyzed using a BD Accuri-C6 and data assessed using the FlowJo software using CD49a (Integrin α1) as selection criteria for PLC since 100% of the cells expressed this marker (Becton Dickinson Immunocytometry Systems, San Jose, CA, United States).
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7

ATP Depletion and Epigenetic Regulation

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ATP depletion was achieved at 10 mM Na Azide (Sigma‐Aldrich) in combination with 50 mM 2‐DG (Sigma‐Aldrich). For HDAC inhibition, trichostatin‐A (TSA; Sigma‐Aldrich) was added to the cells to a final concentration of 200 ng/ml, for 9 h. Cells were grown in the presence of the SUV4‐20H1/H2 inhibitor A‐196 (Sigma‐Aldrich) at a final concentration of 10 μM for the indicated times.
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8

Peptide-Specific Tetramer Staining

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Splenocytes, (10 × 106), from immunized animals were re-suspended in 200 μl sort buffer which contained 2 % FCS and 0.2 % Na azide (Sigma) in HBSS (FACS buffer). Fc receptors were blocked with the addition of anti-Fc (BD) for 20 min. Next, 2 μl of peptide specific PE-labeled tetramer (NIAID Tetramer facility, Atlanta, GA) was added and the cells were incubated for 1 h at 37 °C. After one wash with FACS buffer, the cells were stained with anti-CD3 FITC and CD8 PerCp. Following washing, the cells were fixed as described above and were sorted on a FACS ARIA with 106 events acquired.
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9

Maintenance and Manipulation of Human Cell Lines

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Human U2OS cells were maintained in low glucose DMEM (Biological Industries, Beit-Haemek, Israel), supplemented with 10% fetal bovine serum (HyClone Laboratories, Logan, UT), 1% Glutamine (Biological Industries, Beit Haemek, Israel), and 1% penicillin–streptomycin solution (Biological Industries). MCF7 and HeLa cells were maintained in high glucose DMEM (Biological Industries), supplemented with 10% fetal bovine serum and 1% penicillin–streptomycin solution. All cells were grown at 37 °C in 5% CO2. The GFP-dystrophin-MS2 U2OS cell line22 (link) was selected using 165 μg/μl hygromycin (Sigma-Aldrich) and activated using Ponasterone A (PonA) at 5 μg/μl for 24 h (unless otherwise specified). Hyper-osmolarity treatment was performed with 1:100 10XPBS for 10 min. ATP depletion was performed using either 2-deoxy-d-glucose (20 mM, Sigma) or Na-azide (20 mM, Sigma) in medium for either 15 min or 1 h. Hoechst 33342 (2.5 μM) was used for labeling DNA. Puromycin (Invivogen) was used at a concentration of 10 μg/ml for 30 min in medium. Cycloheximide (Sigma-Aldrich) was used at a concentration of 100 μg/ml for 4 h in medium.
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10

Monocyte Extracellular and Intracellular Profiling

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Antibodies used for extracellular staining of monocytes and their surface molecules were purchased from BD Biosciences, Heidelberg, Germany (CD16-PE (clone 3G8), CD80-PE (clone L307.4), CD86-FITC (clone 2331), TLR-2-APC (clone 11G7)), TLR-4-PE (clone TF901)), Biolegend, San Diego (PD-L1-APC (clone 29E.2A3) and Miltenyi Biotech, Bergisch-Gladbach, Germany (CD11b-APC (clone REA713), CD14-PerCP (clone TÜK4) and CD18-FITC (clone TS1/18)). Supplementary Fig. 1A shows gating strategy for monocytes.
For intracellular staining, 1 × 106 extracellular stained CBMC were washed with FACS-buffer (PBS with 0.1% foetal calf serum (FCS, Sigma, Munich, Germany) and 0.1% Na-azide (Sigma)). In all, 200 µl of Cytofix/Cytoperm (BD Biosciences) were added and cells incubated for 20 min at 4 °C. After that, cells were washed with Perm/Wash buffer (BD Biosciences) and intracellular antibodies (IL-1β-PE (clone AS10), IL-8-PE (clone G265-8), TNF-α-PE (clone 6401.111), TGF-β-PE (clone TW4-9E7), all from BD Biosciences) were added and incubated for 30 min at 4 °C. Cells were then washed twice with FACS-buffer and analysed.
Data acquisition was performed with a FACSCanto flow cytometer (BD Bioscience) and data analysed via FlowJo V10 (FlowJo, LLC, Ashland, OR).
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