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Magna rip rna binding protein immunoprecipitation kit

Manufactured by BersinBio
Sourced in China

The Magna RIP RNA Binding Protein Immunoprecipitation Kit is a tool used to isolate and purify RNA-binding proteins and their associated RNA molecules from cell or tissue samples. The kit provides reagents and protocols for the immunoprecipitation and analysis of ribonucleoprotein complexes.

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12 protocols using magna rip rna binding protein immunoprecipitation kit

1

Ago2 Enrichment via RIP Assay

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The RIP assay was implemented via a Magna RIP RNA Binding Protein Immunoprecipitation Kit (Bersinbio, Guangzhou, China). DU145 or LNCaP cells were lysed adopting RIP lysis buffer. Cell lysates were then divided into two equivalent parts for incubating with either anti-Ago2 antibody (ab32381, Abcam, Cambridge, MA, USA) or non-specific anti-IgG antibody (ab190475, Abcam). Magnetic beads (Invitrogen) were supplemented to cell lysates and incubation was continued for 1 h, after which were incubated with Proteinase K (Absin, Shanghai, China) for 1 h at 55 °C. Detection of the enriched RNA was subjected to RT-qPCR. Assay was undertaken in at least triplicate.
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2

Argonaute2 Immunoprecipitation for RNA Analysis

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The RIP assays were performed with Magna RIP RNA-binding protein immunoprecipitation kit (Bersinbio) following the manufacturer’s protocol. The indicated cells (2X107) were lysed in complete RIP lysis buffer and incubated with human anti-Argonaute2 (AGO2, CST, USA) or non-specific anti-immunoglobulin G (IgG, Millipore) antibody-conjugated beads in rotation for 12 hours at 4 °C. The enriched RNA was obtained from the binding complexes by completely washed, eluted and purified. The enrichments of the target RNAs were detected by qRT-PCR.
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3

Characterizing circHipk2-Rpl7 Interaction

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A Magna RIP RNA-Binding Protein Immunoprecipitation Kit (BersinBio) was used to determine the interaction between circHipk2 and Rpl7. Antibodies used for the RIP assay included anti-Rpl7 and control IgG (Millipore, Billerica, MA, USA). The RNA/protein complex was recovered using protein G Dynabeads™ and washed with RIPA buffer several times. Following digestion with proteinase K, RNA was recovered using TRIzol and analyzed by RT-qPCR.
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4

AGO2 RIP Assay for Gene Expression

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The RIP assay was carried out using a Magna RIP RNA Binding Protein Immunoprecipitation Kit (Bersinbio, Guangzhou, China) according to the manufacturer’s protocol. PC3 cells (2 × 107) were lysed in complete RIP lysis buffer and the cell lysates were divided into two equal parts and incubated with either 5 μg human anti-Argonaute2 (AGO2) antibody (Millipore, Billerica, MA, USA) or non-specific anti-IgG antibody (Millipore) with rotation at 4°C overnight. Magnetic beads were added to the cell lysates and incubation was continued at 4°C for 1 h. The samples were then incubated with Proteinase K at 55°C for 1 h. The enriched RNA was obtained using RNA Extraction Reagent (Enol: Chloroform: Isoamylol = 125:24:1, pH < 5.0; Solarbio). The purified RNA was used to detect the expression levels of the genes of interest by qRT-PCR.
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5

RNA Immunoprecipitation Assay for AGO2

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The RIP assay was carried out using a Magna RIP RNA Binding Protein Immunoprecipitation Kit (Bersinbio, Guangzhou, China) according to the manufacturer’s protocol. Huh7 cells (2 × 107) were lysed in complete RIP lysis buffer and the cell lysates were divided into two equal parts and incubated with either 5 μg human anti-Argonaute2 (AGO2) antibody (Millipore, Billerica, MA, USA) or non-specific anti-IgG antibody (Millipore) with rotation at 4 °C overnight. Magnetic beads were added to the cell lysates and incubation was continued at 4 °C for 1 h. The samples were then incubated with Proteinase K at 55 °C for 1 h. The enriched RNA was obtained using RNA Extraction Reagent (Enol: Chloroform: Isoamylol = 125:24:1, pH<5.0; Solarbio). The purified RNA was used to detect the expression levels of the genes of interest by qRT-PCR.
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6

RIP Assay for Ago2 Interaction

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The RIP assay was implemented with the application of Magna RIP RNA Binding Protein Immunoprecipitation Kit (Bersinbio, Guangzhou, China). After being lysed in the complete RIP lysis buffer, cell lysates were obtained and separated into two equal parts for the overnight incubation with antibody against anti-Argonaute2 (Ago2) (Millipore, Billerica, MA, USA) or IgG (Millipore) with rotation at 4°C. Then the cell lysates were incubated for 1 h with the addition of magnetic beads. Thereafter, Proteinase K was added and samples underwent 1-h incubation. The expressions of purified RNAs were determined by quantitative real-time RT-PCR analysis.
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7

RNA Immunoprecipitation Assay for miR-665 and hsa_circ_0006646

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RNA immunoprecipitation (RIP) assay was performed using a Magna RIP RNA-binding protein immunoprecipitation kit (BersinBio, Guangzhou, China) according to the manufacturer’s protocol. In brief, AGS and HGC27 cells were harvested and lysed in complete RIP lysis buffer after transfected with miR-665 mimics or negative control. Then, the cell extract was incubated with magnetic beads conjugated with anti-immunoglobin G (IgG) or anti-Ago2 antibody (BersinBio, Guangzhou, China) for 6 h at 4 ℃. The beads were washed and incubated with proteinase K to remove proteins. Finally, isolated RNA was extracted using TRIzol reagent (Solarbio, China), and the purified RNA was subjected to agarose gel electrophoresis and qRT-PCR analysis for detecting the enrichment of hsa_circ_0006646 and miR-665 in Ago2-immunoprecipitates.
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8

Argonaute2 Immunoprecipitation for RNA Analysis

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The RIP assay was carried out using a Magna RIP RNA-binding protein immunoprecipitation kit (Bersinbio, Guangzhou, China) according to the manufacturer’s protocol. Huh7 cells (2 × 107) were lysed in complete RIP lysis buffer and the cell lysates were divided into two equal parts and incubated with either 5 μg of human anti-Argonaute2 (AGO2) antibody (Millipore, Billerica, MA, USA) or non-specific anti-immunoglobulin G (IgG) antibody (Millipore) with rotation at 4°C overnight. Magnetic beads were added to the cell lysates and incubation was continued at 4°C for 1 h. The samples were then incubated with proteinase K at 55°C for 1 h. The enriched RNA was obtained using RNA extraction reagent (enol/chloroform/isoamylol at 125:24:1, pH of <5.0; Solarbio). The purified RNA was used to detect the expression levels of the genes of interest by quantitative real-time PCR.
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9

Argonaute2 Immunoprecipitation Protocol

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The RIP assay was performed using a Magna RIP RNA Binding Protein Immunoprecipitation Kit (Bersinbio, China) according to the manufacturer’s protocol. 2 × 107 MG63 or U2OS cells were lysed in complete RIP lysis buffer and the cell lysates were divided into two equal parts and incubated with either 5 μg human anti-Argonaute2 (AGO2) antibody (Millipore, USA) with rotation at 4 °C overnight. Magnetic beads were added to the cell lysates and incubation was continued at 4 °C for 1 h. The samples were then incubated with Proteinase K at 55 °C for 1 h. The enriched RNA was obtained using RNA Extraction Reagent (Solarbio, CHN). The purified RNA was used to detect the expression levels of the genes of interest by qRT-PCR.
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10

Argonaute2-Mediated RNA Immunoprecipitation

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The interaction among studied genes was confirmed by RIP assay utilizing a Magna RIP RNA Binding Protein Immunoprecipitation Kit (Bersinbio, Guangzhou, China) as the manufacturer advised. 293T and HepG2 cells (2 × 107) were lysed with complete RIP lysis buffer to generate the cell lysates, which were later separated into two equal parts and cultured with 5 μg antibody against Argonaute2 (Ago2; Millipore), anti-SNRNP70 (Millipore) or nonspecific IgG (Millipore) along with rotation at 4 °C overnight. Thereafter, magnetic beads were supplemented into the cell lysates for 1 h of incubation at 4 °C, followed by extra 1 h of incubation with Proteinase K at 55 °C. RNA Extraction Reagent (Solarbio) was employed to gain the enriched RNA for subsequent qRT-PCR detection of the expression of the researched genes involving U1, PITPNA-AS1, miR-876-5p, and WNT5A.
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