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7 protocols using ag1478

1

Corynebacterium Stimulation of Primary Human Keratinocytes

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Primary normal human keratinocytes (NHEK, Promocell, Heidelberg, Germany) were cultured in “Keratinocyte Growth Medium 2” (KGM2) and seeded in 12-well plates for stimulation (passage 3–5). Cells used for stimulation were always 100% confluent. Corynebacterium amycolatum and Corynebacterium xerosis (clinical isolates from the Institute of Infection Medicine, Kiel; identity verified by MALDI-TOF mass spectrometry (MALDI Biotyper, Bruker, Billerica, MA)) were cultured in brain-heart infusion (BHI) medium (Sigma-Aldrich, St. Louis, MO). For stimulation an overnight culture of bacteria grown at 37 °C under agitation was pelleted by centrifugation (2000 × g, 5 min), washed with phosphate buffered saline (PBS, Biowest SAS, Nuaillé, France) and resuspended and diluted in KGM2 to an optical density (OD600) of 0.2 and further diluted 1:10 in KGM2 cell culture medium for stimulation. Stimulation (500 µl each well) was carried out for 20–22 h or for the indicated time period. To analyze the impact of the EGFR a specific monoclonal anti-EGFR antibody cetuximab (20 µg/ml, Merck, Darmstadt, Germany) as well as the specific EGFR inhibitor AG-1478 (10 µM, Tyrphostin, ENZO LifeScience, Lörrach, Germany) were used.
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2

Biochemical Analysis of Cellular Signaling

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DMEM (Dulbecco’s modified Eagle’s medium)/F-12 medium, FBS (fetal bovine serum), and TRIzol were from Invitrogen (Carlsbad, CA, USA). The Hybond C membrane and ECL (enhanced chemiluminescence) Western blot detection system were from GE Healthcare Biosciences (Buckinghamshire, UK). The phospho-c-Src (Tyr416) (Cat. #6943), phospho-EGFR (Tyr845) (Cat. #2231), phospho-Akt (Ser473) (Cat. #4060), phospho-ERK1/2 (Thr202/Tyr204) (Cat. #4370), phospho-p38 (Thr180/Tyr182) (Cat. #4511), phospho-JNK1/2 (Thr183/Tyr185)(Cat. #4668), and phospho-p65 NF-κB (Ser536) (Cat. #3033) antibodies were from Cell Signaling (Danver, MA, USA). Anti-ZO-1 (Cat. #sc-33725) antibody was from Santa Cruz (Dallas, TX, USA). Anti-GAPDH (glyceraldehyde-3-phosphate dehydrogenase) antibody was from GeneTex (Irvine, CA, USA). MMP2/9 inhibitor (2/9i), apocynin, PP1, AG1478, SH-5, U0126, SB202190, SP600125, Bay11-7082, and were from Enzo (Farmingdale, NY, USA). BCA (Bicinchoninic acid) protein assay reagent was from Pierce (Rockford, IL, USA). IL-1β (interleuline-1β) was from R&D Systems (Minneapolis, MN, USA). NAC (N-acetyl-cysteine), enzymes, and other chemicals were from Sigma (St. Louis, MO, USA).
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3

Molecular signaling regulation analysis

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Recombinant human EGF was obtained from R&D Systems (Minneapolis, MN). PD98059 [extracellular signal-regulated kinases (Erk) inhibitor] was purchased from EMD Chemicals (Billerica, MA). SB203580 (p38 MAPK inhibitor), SP600125 [stress activated protein kinase/c-jun terminal kinase (SAPK/JNK) inhibitor], AG-1478 (EGFR inhibitor) and wortmannin (PI3K inhibitor) were purchased from Enzo Life Sciences (Farmingdale, NY). LY294002 (PI3K inhibitor) was purchased from Cayman Chemical (Ann Arbor, MI). Small interfering RNAs (siRNA) for control and transfection reagents were obtained from Dharmacon (Thermo Scientific, Pittsburgh, PA). The siRNAs for Akt1 and Erk1/2 and antibodies for ErbB isoforms and β-actin were obtained from Santa Cruz Biotechnology (Dallas, TX). Antibodies for MAPK/Akt isoforms and human-specific/mouse-specific Akt2 siRNAs were obtained from Cell Signaling Technology (Danvers, MA). Chemiluminescent detection kits came from GE Healthcare (Piscataway, NJ).
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4

Analyzing Cell Motility Dynamics

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The cells of each LEC subline (5×104) were seeded in 6-well plates in basal medium and incubated overnight. Then the cells were rinsed with PBS and fresh basal medium was added to the wells. Cell movement was recorded at 37°C and 5% CO2 for 6 h at 5-min intervals using Leica DM IRE 2 microscope equipped with FW4000 software. The trajectories of 60 cells per experimental group were analyzed as previously described [30 (link)] in order to determine the basic cell motility parameters: the length of cell trajectory (LT), the average speed of cell movement (defined as LT divided by the time of recording), and the net displacement. In experiments testing the influence of growth factor receptor inhibitors on cell movement, the cells (2×104) were seeded in 12-well plates in basal medium and incubated overnight. Then the cells were rinsed with PBS and incubated with fresh basal medium supplemented with: (i) EGFR inhibitor (AG-1478, Enzo Life Science; final concentration 1.5 μM), (ii) HER2 inhibitor (AG-825, Sigma; final concentration 1 nM), or (iii) both inhibitors. The control groups contained DMSO (vehicle), at the corresponding concentrations (0.01 or 0.001%). The recording of cell movement was started 1 h after the exposure of the cells to the inhibitors. Trajectories of 30 individual cells per experimental group were analyzed.
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5

Signaling Pathway Analysis Protocol

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Dulbecco’s modified Eagle’s medium (DMEM)/F-12 and fetal bovine serum were purchased from Thermo Fisher Scientific (Grand Island, NY, USA). BioTraceTM NT membrane was purchased from Pall Life Sciences (Ann Arbor, MI, USA). The enhanced chemiluminescence (ECL) Western blotting detection system was purchased from Perkin Elmer (Waltham, MA, USA). Anti-phospho-EGFR (Tyr1173, Cat#4407), anti-phospho-p38 MAPK (Thr180/Tyr182, Cat#9211), anti-phospho-JNK1/2 (Thr183/Tyr185, Cat#9255), anti-phospho-FoxO1 (Ser256, Cat#9461), and anti-phospho-p65 (Ser536, Cat#3033) antibodies were purchased from Cell Signaling (Danvers, MA, USA). Antibodies of anti-TNFR1 (Cat#sc-52739), anti-TNFR2 (Cat#sc-8041), and p38 MAPK inhibitor (p38i) VIII were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-GAPDH (Cat#MCA-1D4) was purchased from EnCor Biotechnology (Gainesville, FL, USA). AG1478, SP600125, and Tanshinone IIA were purchased from Enzo Life Science (Farmingdale, NY, USA). AS1842856 was obtained from EMD Millipore (Billerica, MA, USA). Helenalin was purchased from Cayman Chemical (Ann Arbor, MI, USA). Recombinant human TNF-α protein was purchased from R&D Systems (Minneapolis, MN, USA). TRIzol reagent, enzymes, and other chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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6

Foreskin-Derived Keratinocytes Stimulation Assay

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Foreskin-derived primary keratinocytes pooled from different individuals were purchased from PromoCell (Heidelberg, Germany) and cultured in Epilife medium (Life Technologies, Carlsbad, USA) at 37°C in a humidified atmosphere with 5% CO2. For stimulation experiments with conidia and cytokines, keratinocytes were seeded in 12-well tissue culture plates (3.8 cm2/well, BD Biosciences) and used at 100% confluence. Cytokines used for stimulation were from PeproTech (Rocky Hill, NJ). The EGFR-blocking antibody cetuximab was obtained from Merck (Darmstadt, Germany) and AG1478 was purchased from Enzo Life Sciences (Farmingdale, NY). Typical strains of T. rubrum isolates were obtained from the Department of Dermatology, University Hospital of Schleswig-Holstein in Kiel, Germany isolated from tinea lesions of patients who have given written consent which was approved by the Institutional Review Board of the University of Kiel. Patient data were anonymized and de-identified prior to analysis. The strains were identified by established morphologic and physiologic criteria [9] . Microconidia were prepared as recently described [6] (link).
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7

Avian Embryo Somite Development Assay

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Yolks were injected with 0.3 ml of treatment (El-Ghali et al., 2010 (link)) containing AG1478 (Enzo, Farmingdale, NY, #ALX-270-036-M001). Estimates of intra-yolk concentration assumed treatment remained entirely within a ~16 ml yolk (actual distribution cannot be certain). Blocking contained FBS (not goat serum). HNK1 was labeled with Rhodamine Red-X anti-mouse IgM (Jackson ImmunoResearch, West Grove, PA, #115-295-075; glycerol-stored stock was 0.5 mg/ml and applied at 1:500). Images were 4X.
AG1478 was dissolved in DMSO to 1 mM; then diluted in Ringer’s to 4 or 40 μM. HNK1 was ~1:5. On one replicate date, blocking was 2 days at room temperature, HNK1 was 1:10 in PBS, and the secondary was an Alexa 488 anti-mouse IgM (Invitrogen; #A-21042; no glycerol) at 1:1000 in PBS. In 5/60 embryos, where the precise level of TNCC mixing was unclear among 2 or 3 different somite levels, an average of the different levels was used for that embryo.
AG1478 was dissolved in DMSO to 15.83 μM and diluted to 533 μM with Ringer’s and DMSO to yield a 4% DMSO solution. HNK1 was 1:4. To limit variability, TNCC mixing was only counted if spanning 2 consecutive somites. Measurements from both blinded researchers were averaged. A 1-tailed test was chosen based on results from exploratory experiments.
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