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5 protocols using alexa488 conjugated donkey anti chicken

1

Immunohistochemical Analysis of Neuronal Activation

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For all immunohistochemical experiments, mice were anesthetized (Beuthanasia, 320 mg/kg delivered ip) and intracardially perfused with 0.1 M PBS followed by 4% paraformaldehyde. Brains were then extracted, post-fixed in 4% paraformaldehyde overnight, and cryoprotected in 0.1 M PBS containing 20% sucrose until the brains sunk in the sucrose solution. Coronal cryostat sections 30-µm thick were collected and every third section of the PBN and BNST, or every fourth section of the CeA, were processed for immunolabeling and quantification. For co-labeling of GFP and Fos, sections were incubated for 16 h at room temperature in chicken anti-GFP (1:10000, catalogue # ab13970, lot #GR236651-4, Abcam) and goat anti-Fos (1:700, catalogue # sc-52-G, lot #F1615, Santa Cruz Biotechnology). Because we ran out of our original Fos antibody, tissue from Figure 4 was stained with goat anti-Fos from a different lot (1:700, catalogue # sc-52-G, lot #F1616 Santa Cruz Biotechnology). The sections were then washed and incubated for 2 h at room temperature in Alexa488-conjugated donkey anti-chicken (1:400, Jackson ImmunoResearch) and CY5-conjugated donkey anti-goat (1:400, Jackson ImmunoResearch).
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2

Immunohistochemical Analysis of Neuronal Activation

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For all immunohistochemical experiments, mice were anesthetized (Beuthanasia, 320 mg/kg delivered ip) and intracardially perfused with 0.1 M PBS followed by 4% paraformaldehyde. Brains were then extracted, post-fixed in 4% paraformaldehyde overnight, and cryoprotected in 0.1 M PBS containing 20% sucrose until the brains sunk in the sucrose solution. Coronal cryostat sections 30-µm thick were collected and every third section of the PBN and BNST, or every fourth section of the CeA, were processed for immunolabeling and quantification. For co-labeling of GFP and Fos, sections were incubated for 16 h at room temperature in chicken anti-GFP (1:10000, catalogue # ab13970, lot #GR236651-4, Abcam) and goat anti-Fos (1:700, catalogue # sc-52-G, lot #F1615, Santa Cruz Biotechnology). Because we ran out of our original Fos antibody, tissue from Figure 4 was stained with goat anti-Fos from a different lot (1:700, catalogue # sc-52-G, lot #F1616 Santa Cruz Biotechnology). The sections were then washed and incubated for 2 h at room temperature in Alexa488-conjugated donkey anti-chicken (1:400, Jackson ImmunoResearch) and CY5-conjugated donkey anti-goat (1:400, Jackson ImmunoResearch).
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3

Retinal Wholemount Immunohistochemistry

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Immunohistochemistry was performed as previously described11 (link) in retinal wholemounts in methanol-free 4% paraformaldehyde. The primary antibodies used in these studies included rabbit anti-dsRed (product 632496; 1:1000 dilution; Clontech, Saint-Germain-en-Laye, France) and chicken anti-GFP (product ab13970; 1:1000 dilution; Abcam). The secondary antibodies were Alexa 488 conjugated donkey anti-chicken (Jackson Immunoresearch, Bar Harbor, ME, USA) and Alexa 546 conjugated donkey antirabbit (Life Technologies, Corp., Carlsbad, CA, USA) at 1:200 dilution. Images were collected using a model TCS SP5 AOBS inverted confocal microscope (Leica, Wetzlar, Germany), using a 40×/0.50 plan Fluotar objective and 1.5× confocal zoom.
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4

Immunofluorescence and Immunohistochemical Staining

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Immunofluorescence stainings of 4% paraformaldehyde (PFA)-fixed cultured cells were performed in 24 well plates. Immunohistochemical stainings of brain tissues were performed using free-floating sections. Briefly, anesthetized mice were intracardially perfused with 4% PFA in PBS. The brains were removed, fixed overnight in 4% PFA and cut in a Leica VT 1000 S vibratome in 50 μm slices. The slices were permeabilized and blocked using 5% BSA, 0.1% Triton PBS solution for 2 h and were next incubated with the primary antibody using 3% BSA, 0.1% Triton solution overnight. The next day the sections were washed with PBS 3 times and were incubated with the secondary antibody for 4 h in 3% BSA, 0.1% Triton solution. Sections were next washed 3 times with PBS and incubated with DAPI solution for 10 min, washed once again and mounted. Antibodies used were: mouse anti-BrdU (BD Biosciences, cat# 347580), rabbit anti-ACBP (Santa Cruz cat# sc30190), chicken anti-EGFP (Abcam, cat# ab13970), rabbit anti-DsRed (Clontech Living Colors, cat# 632496), mouse anti-ITGB1 (Abcam, cat# ab24693), Alexa 647 conjugated donkey anti-mouse and anti-rabbit (Thermo Fisher, cat# A21447, cat# A31573), Alexa 488 conjugated donkey anti-chicken (Jackson ImmunoResearch Laboratories cat# 703-545-155) and Cy3 conjugated donkey anti-rabbit (Jackson ImmunoResearch Laboratories cat# 711-165-152).
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5

Fluorescent Staining of Drosophila Embryos

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Dechorionated, formaldehyde-fixed, methanol devitellinized embryos were fluorescently stained as previously described [51 ]. The following primary antibodies were used: mouse anti-1D4/FasII [Developmental Studies Hybridoma Bank (DSHB); 1:100], mouse anti-Beta gal [DSHB; 1:150], mouse anti-Myc [DSHB (9E10); 1:500] rabbit anti-GFP [Invitrogen (#A11122); 1:500], Mouse anti-HA [Covance (16B12) 1:250], Chicken anti-GFP [Aves Labs (GFP-1020) 1:1000]. The following secondary antibodies were used: Alexa647- conjugated goat anti-HRP [Jackson Immunoresearch (#123-605-021); 1:500]. Cyanine 3-conjugated goat anti-rabbit [Jackson; 1:1000], Alexa488-conjugated goat anti-mouse [Molecular Probes; 1:500] and Alexa488-conjugated donkey anti-chicken [Jackson Immunoresearch; 1:500]. Embryos were mounted in 70% glycerol/PBS.
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