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Zen 2.1 blue edition

Manufactured by Zeiss
Sourced in Germany

The ZEN 2.1 blue edition is a software suite designed for microscope control and image processing. It provides a comprehensive platform for image acquisition, analysis, and data management, supporting a wide range of Zeiss microscopes.

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4 protocols using zen 2.1 blue edition

1

Measuring ACE2 Expression in Cells

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Cells were seeded on glass coverslips precoated with collagen in 24-well plates. After incubation at 37°C, cells were treated according to the experimental protocol with E2 (200 nM), raloxifene (20μM), and S (10 ng/ml). After 72 hours, cells were washed, fixed with 4% formaldehyde, permeabilized with 0.1% Triton X-100 in PBS, and stained overnight at 4°C with ACE2 protein–specific antibody (Abcam, Ab15348). Cells were then incubated with anti-rabbit secondary antibody (Alexa Fluor 536 anti-rabbit, Invitrogen Life Technologies) for 1 hour at 37°C. Nuclei were labeled with Hoechst 33342 (Thermo Fisher Scientific) for nuclear staining for 20 min. Cells were mounted with Fluor mount (Sigma-Aldrich, St. Louis, MO, USA), and images were acquired through confocal microscope LSM 800, 60× magnification, software ZEN 2.1 blue edition (Carl Zeiss, Jenza, Germany) and analyzed with ImageJ software.
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2

Biofilm Imaging and Quantification

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Biofilms were grown in confocal dishes (SPL Life Sciences, South Korea) at 37°C for 24 h in LB broth. The biofilm cells were stained with FilmTracer™ SYPRO Ruby (Invitrogen, USA) for 30 min at room temperature, protected from light, and then washed with distilled water. The observed confocal laser scanning microscopy (CLSM; Carl Zeiss, Germany) images were analyzed and modified using the Zen 2.1 (Blue edition; Carl Zeiss, Germany) software.
LB broth in sterile 96-well microtiter plates (SPL Life Sciences, South Korea) was inoculated in triplicate with each overnight LB-grown culture and diluted 1:100 in LB broth. The volume of the cells was determined by converting the OD600 value of the O/N cells. Uninoculated LB broth was used as a negative control. The microtiter plates were then incubated at 37°C for 24 h. After removing planktonic cells, the biofilm biomass was stained with crystal violet and solubilized with 95% ethanol (v/v), after which its absorbance was measured at 550 nm.
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3

Yeast Cell Imaging Protocol

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Fixed cells were prepared using the same protocol as mentioned above. Fixed cells resuspended in 1M sorbitol (Sigma-Aldrich) were then dropped onto microscopic slides (Shandon SuperFrost Plus, Thermo Fisher Scientific). After putting on the coverslips (Menzel Gläser, Thermo Fisher Scientific), excess liquid was blotted off with a lint-free lab wipe to prevent cells from floating around, then the edges of the coverslips were sealed with nail polish. Cell imaging (Zeiss LSM800 with AiryScan using Plan-APOCHROMAT 63X/1.4 Oil DIC ∞/0.17 objective (Zeiss, Jena, Germany), the Advanced Cell Imaging Center, Institute of Molecular Biosciences) was performed by capturing the yeast samples in Z-stack of approximately 1–3 μm and compressing each set of Z-stack images into a single 2-dimensional image using maximum projection (ZEN 2.1 blue edition, Zeiss, Jena, Germany).
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4

Biofilm Formation Quantification and Modulation

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Biofilms were grown in confocal dishes (SPL Life Sciences, South Korea) at 37°C for 24 hr in LB broth. The biofilm cells were stained with FilmTracer SYPRO Ruby (Invitrogen, USA) for 30 min at room temperature (RT), protected from light, and then washed with distilled water. The obtained CLSM (Carl Zeiss, Germany) images were analyzed and modified using the Zen 2.1 (Blue edition; Carl Zeiss, Germany) software. LB broth in sterile 96-well microtiter plates (SPL Life Sciences) was inoculated in triplicate with each overnight LB-grown culture and further diluted 1:100 with LB broth. The volume of the cells was determined by converting the OD600 value of the O/N cells. Uninoculated LB broth was used as the negative control. The microtiter plates were then incubated at 37°C for 24 hr. After removing planktonic cells, the biofilm biomass was stained with crystal violet and solubilized with 95% ethanol (v/v), after which its absorbance was measured at 595 nm. To measure OMVs-induced initial stage of biofilm formation in Lab-WT, cells were grown at 37°C in LB until an OD600 reached around 0.6 (for 6 hr). Biofilm formation was checked after additional 4 hr incubation with PMRHigh-driven OMVs (0, 12.5, or 25 μg/mL), then both crystal violet assay and CLSM observation were used.
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