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59 protocols using ripa lysate

1

Western Blot Analysis of IGF2BP1, c-Myc, and β-Actin

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The cells were lysed using RIPA lysates (Solarbio, Beijing, China) with protease inhibitor (Beyotime, Beijing, China). Total proteins in the lysates were separated by 10% SDS–polyacrylamide gel electrophoresis and dotted to a polyvinylidene difluoride membrane (Millipore, MA, USA). We incubated the membranes with 5% skim milk powder for 1 h to block the non-specific binding at room temperature (21–25℃). Then the membrane was incubated overnight with the primary antibody. anti-IGF2BP1, anti-c-Myc, and anti-β-actin were purchased from Proteintech (Wuhan, China).
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2

Western Blot Analysis of Protein Expression

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Briefly, RIPA lysates (Solarbio, R0010) were employed to extract proteins. The protein content was quantified by BCA kit. Then, electrophoresis was performed at 120 V for 90 min. After electrophoresis, proteins were transferred onto PVDF membrane by electroblot and blocked by 5% milk for 1 h. After that, PVDF membranes were co‐incubated with primary antibodies including LC3b (1:1000), GPX4 (1:1000, Abclonal, A1933), FTH1 (1:1000, CST, 4393), HASP5 (1:1000, CST, 3177), p‐elf2α (1:1000, Proteintech, 28740‐1‐AP), elf2α (1:1000, Proteintech, 11170‐1‐AP), ATF4 (1:1000, Proteintech, 10835‐1‐AP), DDIT3 (1:1000, CST, 2895T), CHMP5 (1:1000, Abcam, ab96273), CHMP6 (1:1000, Abclonal, A4975), Alix (Abclonal, A2215), CD63 (Abclonal, A19023), CD9 (Abclonal, A19027), and GAPDH (1:10 000, Abcam, ab181602). Next, the membranes were washed with PBS and incubated with horse radish peroxidase (HRP)‐conjugated secondary antibodies (1:10 000, ZSGB‐BIO, China) for 1 h at RT. Antibody reactivity was detected by the ECL kit (Solarbio, China) and visualized by the UVITEC Alliance MINI HD9 system (UVITEC, Britain). Image J software was used to quantify the gray value representing the protein expression level.
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3

Protein Extraction and Analysis

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Whole cell lysates were isolated using protein extract buffer, and tumor proteins were isolated using RIPA lysates (Solarbio, Beijing, China) with phenylmethylsulfonyl fluoride (PMSF) in the cocktail. Equal amounts of total protein were electrophoresed using SDS/PAGE. Protein signals were visualized using chemiluminescence reagents. Protein concentrations were estimated by the BCA method. The protein expression was analyzed by ImageJ Lab software (Bio-Rad, Hercules, CA, USA).
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4

Western Blot Analysis of Mitochondrial Proteins

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Proteins were lysed by RIPA lysates (Solarbio, Beijing, China) added with PMSF (Solarbio, Beijing, China) and phosphatase inhibitors (PhosphoStop, Roche, Germany). And then proteins were separated and transferred to PVDF membranes. Membranes were incubated overnight with the following primary antibodies: PGAM5 (1:500, cat.no.sc515880,santa cruz, CA, USA), Tom20(1:8000, cat.no. 11802-1-AP, Proteintech, Wuhan, China), MFF (1:20,000, cat.no. 17090-1-AP, Proteintech, Wuhan, China), Fis1 (1:1000, cat.no. 10956-1-AP, Proteintech, Wuhan, China), MFN2 (1:20,000, cat.no. 12186-1-AP, Proteintech, Wuhan, China), β-actin (1:20,000, cat.no. 20536-1-AP, Proteintech, Wuhan, China), β-tubulin (1:10,000, cat.no. 10094-1-AP, Proteintech, Wuhan, China), and p-Drp1 (1:1000, cat.no. 3455, CST, USA). HRP-labeled secondary antibody was applied at room temperature for 1 h. The chemiluminescence signal was detected using an Amersham Imager 800 (Amersham Biosciences, Buckinghamshire, UK).
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5

Western Blot Analysis of Spinal Cord Proteins

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For western blot assay, total proteins were extracted from spinal cord tissues and homogenized in RIPA lysates (Solarbio, Beijing, China) supplemented with phenylmethyl sulphonyl fluoride (PMSF). The protein concentration was evaluated by the BCA assay kit (Solarbio). Proteins were resolved on sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels, transferred to the polyvinylidene fluoride membranes (MilliporeSigma, St. Louis, USA), and blocked in the non-fat powdered milk. The membranes were then incubated with primary antibody at 4°C overnight. After incubation with HRP-conjugated secondary antibodies, the blots were developed with enhanced chemiluminescence substrate reagents (Solarbio). Primary antibodies used in the present study included HGFIN (1:5000; Proteintech Genomics, San Diego, USA; 66926-1-Ig), cleaved PARP (1:1000, AF7023; Affinity Biosciences, Cincinnati, USA), cleaved caspase-3 (1:1000, AF7022; Affinity), Bcl-2 (1:1000, AF6139; Affinity), AKT (1:3000, 10176-2-AP; ProteinTech), and p-AKT (1:2000, 66444-1-Ig; Protein Tech).
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6

Quantifying SIRT1 and MMP9 Protein Levels

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RIPA lysate (Solarbio) and protease inhibitor PMSF (Solarbio) with a final concentration of 1 mM were added into the cells, and then, the total protein of the cells was extracted by centrifugation. The total protein concentration was tested by the BCA method, the final loading protein concentration was adjusted to 5–10 μg/μl, the sample was loaded, and 10% SDS-PAGE separation gel was applied for gel electrophoresis. The target protein was transferred to PVDF membrane by the semiwet transfer method, sealed with 5% skimmed milk powder for 1 h, and then added with SIRT1 (60303-1-Ig, Proteintech, 1 : 4000) and MMP9 (10375-2-AP, Proteintech, 1 : 1000) primary antibody diluent at 4°C overnight. After being washed with 0.1% PBST buffer for 3 times, the corresponding HRP-labeled secondary antibody (SA00001-1/2, Proteintech, 1 : 5000) was added and incubated at room temperature for 1 h and then washed with 0.1% PBST buffer for 3 times. ECL chemiluminescence solution (Solarbio) was evenly dripped on PVDF membrane, and the expression of protein was analyzed by ImageJ.
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7

Protein Extraction and Western Blot Analysis

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Hippocampal or cell proteins were extracted using RIPA lysate (containing protease inhibitors, Solarbio, China). Samples were completely disrupted at 4 °C for 30 min, followed by centrifugation at 13,000 g for 15 min, and the determination of total protein concentration by bicinchoninic acid assay (BCA, Solarbio). After density at 95°C for 10 min, 30 μg of protein was loaded onto an SDS-PAGE gel for subsequent electrophoresis. Western blotting was performed as previously described 11 (link), 41 (link), 42 (link). ChemiDoc XRS (Bio-Rad, USA) was used to visualise immunoreactive proteins. The relative intensity of the bands was quantified using the Image Lab Analyzer software (Bio-Rad). The antibodies used in this study are listed in Table 1.
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8

Quantifying Myocardial Protein Expression

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The total proteins of myocardial tissues and cardiomyocytes were lysed using RIPA lysate (Solarbio, R0010). The bicinchoninic acid protein assay (Solarbio, PC0020) was used to measure the concentration of proteins in the supernatant. The protein samples (50 µg, 15 μL) were then run on a 10% SDS-PAGE gel and subsequently blotted to a PVDF membrane (Millipore, Billerica, MA, United States, IPVH 0010). After being blocked with 5% nonfat dried milk, the membrane was incubated at 4 °C overnight with primary antibodies, followed by incubation with the goat anti-rabbit IgG as secondary antibody at 37 °C for 1.5 h. The antibodies used were as follows: Anti-phosphorylated myosin phosphatase target subunit 1 (p-MYPT1) and anti-total myosin phosphatase target subunit 1 (t-MYPT1), anti-cleaved caspase 3, anti-AMPK, anti-p-AMPK, anti-PGC-1α (these antibodies were all from Cell Signaling Technology, USA), anti-SGLT1 (Abcam, United States), anti-SGLT2 (Abcam), and anti-β-Tubulin (Abways). Finally, the membrane was detected using chemiluminescent reagents (Solarbio, SB-WB012S) and Image J (Bio-Rad).
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9

Western Blot Analysis of IPEC-J2 Proteins

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RIPA lysate (Solarbio, Beijing, China) containing protease inhibitors was used to extract IPEC-J2 cells protein. The BCA Protein Concentration Assay Kit (Beyotime) was used to calculate the protein concentration. Following a 10 min incubation at 100 °C, the protein underwent denature. Electrophoresis using 10% SDS-PAGE was then carried out. Membranes made from polyvinylidene difluoride (PVDF) were used for transferring the proteins. The membranes were blocked with 5% skimmed milk for 2 h at room temperature after being rinsed once with tris-buffered saline with Tween (TBST). The primary antibodies (Bioss, Beijing, China) were then added and diluted, and incubated at 4 °C overnight. The membranes were washed with TBST for five minutes the next day, and the procedure was repeated three times. The membranes were subjected to diluted secondary antibody (IgG/HRP) incubation at room temperature for 1.5 h, followed by three TBST washes. Eventually, the enhanced chemiluminescence (ECL) kit (Proandy, Xian, China) was used to observe protein bands. Table S2 provides specific information of antibodies.
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10

Western Blot Analysis of HEV Infection

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JEG-3 cells and mouse placenta tissues with HEV infection were treated with RIPA lysate (Solarbio, Beijing, China) and lysed for 20 min on ice. BCA protein quantification kit, which was provided by Thermo Fisher Scientific (Waltham, USA), was applied to measure and adjust the protein concentration of the samples in each group. The sample was heated with boiling water for 10 min after loading buffer (Cell Signaling Technology, Boston, USA) was added. Protein samples were separated by SDS‒PAGE (10% Bis-Tris Gel) and transferred to polyvinylidene fluoride (PVDF) membranes, which were obtained from Millipore (Bedford, USA). The membrane was transferred at a constant current of 200 mA for 50‒100 min, depending on the size of the target protein. After washing, the PVDF membranes were immersed in PBST containing 5% skim milk powder (Mengniu, Inner Mongolia, China) for 60 min at room temperature and then incubated with primary antibodies at a dilution of 1:1000 at 4°C overnight. The next day, after washing with PBST for three times, the PVDF membranes were incubated with goat anti-rabbit or mouse IgG (HRP) for 50 min at room temperature. Washing with PBST again, the PVDF membranes were developed with immobilon classico western HRP substrate (Millipore, Bedford, USA) and photographed by Tanon 5200 (Shanghai, China).
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