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6 protocols using anti bak

1

Western Blot Analysis of BAK and BAX Proteins

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Parental and BAK-deficient SKBR3 cells were lysed in ice-cold CelLytic™ (Sigma, St. Louis, MO) supplemented with protease (Roche Diagnostics Corporation, Indianapolis, IN) and phosphatase inhibitors (Sigma, St. Louis, MO). Protein concentrations were determined by the BSA assay (Invitrogen, Carlsbad, CA) and 50 µg of protein electrophoresed by SDS Page (Invitrogen). Separated proteins were transferred to nitrocellulose membranes utilizing iBlot® (Invitrogen). Blots were probed with anti-BAK (Abcam, Catalog #ab32371), anti-BAX (Cell Signaling Technology, Catalog #CS2774; Danvers, MA) or GAPDH (Abcam, Catalog #ab110305), followed by IRDye 680RD/800CW-conjugated antibodies (LI-COR Biosciences, Lincoln, NE). Proteins were visualized utilizing the Odyssey® infrared imaging system (LI-COR Biosciences).
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2

Examining Apoptosis-Regulating Proteins in MEFs

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All cell culture and transfection reagents were from Invitrogen; and standard reagents were from Sigma or Fisher Scientific unless indicated. Drugs were from: ABT-737 (Abbott Pharmaceuticals), Hoechst 33342 (Anaspec); and β-ME, Cisplatin, DTT, JC-1, mDIVI-1, Paclitaxel, Tg, TMRE, and Tun (Sigma). Antibodies (clone): anti-actin (C4), anti-BCL-2 (100), anti-MCL-1 (Rockland), anti-BIM (22-40), anti-PUMA (CT; Sigma), anti-cytochrome c (7H8.2C12), anti-BAK (NT), anti-BAX (clone 6A7 for IP; clone N20 for western blot; clone Δ21 for trypsin studies), anti-BCL-xL (S18), anti-GAPDH (9B3), anti-Mfn1 (ABCAM, 57602), anti-Mfn2 (ABCAM, 56889), anti-HSP60 (B-9). BAX, BAXΔC, BAXS184A, BCL-xLΔC, N/C-BID, BIM-S were made as described (Chipuk et al., 2008 (link); Suzuki et al., 2000 (link); von Ahsen et al., 2000 (link)). The human BIM and PUMA BH3 domain peptides (Abgent) were resuspended in anhydrous DMSO. Knockout and Wt matched MEFs: Bak−/−, Bax−/−, Bak−/−Bax−/−, Bid−/−, Bid−/−Bim−/−, Puma−/−, Mfn1−/− and Mfn2−/− were obtained from Drs. Stanley Korsmeyer (Wei et al., 2001 (link)), Doug Green (Chipuk et al., 2008 (link)), Gerald Zambetti (Jeffers et al., 2003 (link)), and ATCC (Chen et al., 2003 (link)).
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3

Western Blot Analysis of Protein Expression

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Protein samples were separated by SDS-PAGE and transferred to a nitrocellulose membrane (Thermo Fisher Scientific). The membranes were blocked with Tris-buffered saline containing 0.1% Tween-20 and 5% skim milk (BD, US) for 30 min, followed by incubation with anti-GFP, anti-HA, anti-Bcl-xL, anti-Caspase-3 (Cell Signaling Technology, US), anti-Bax (Cell Signaling Technology, Santa Cruz Biotechnology), and anti-Bak (Abcam, UK) antibodies. After incubation, the samples were incubated with goat anti-mouse IgG secondary antibody with HRP (Thermo Fisher Scientific) and goat anti-rabbit IgG secondary antibody with HRP (Enzo Life Sciences) and then analyzed using the FUSION Solo X chemiluminescence imaging system (Vilber Lourmat, France).
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4

Western Blot Analysis of Apoptosis-Related Proteins

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Proteins were isolated from stably transfected cells at 90% confluence using the RIPA lysis buffer (Beyotime Biotechnology, Jiangsu, China). Their concentrations were quantified using a BCA protein assay kit (Beyotime Biotechnology, Jiangsu, China), and the proteins (30 µg/lane) were separated via SDS-PAGE before transfer to a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA). Following this, the membrane with the proteins was subjected to the following incubations and washes: 5% lipid-free milk solution at 37°C for 1.5 h, primary antibody at 4°C overnight (ON), HRP-conjugated secondary antibody (1:1,000; Abcam, Shanghai, China) for 2 h at 37°C, and three TBST buffer washes. Finally, the protein signals were visualized using an enhanced chemiluminescence detection system with a chemiluminescent HRP substrate (Millipore, MA, USA). The antibodies used for protein detection were as follows: anti-UQCRC2 (1:1000, Abcam, Shanghai, China), anti-GAPDH (1:5000; Cell Signaling Technology, MA, USA), anti-cleaved caspase-3 (1:200, Cell Signaling Technology, MA, USA), anti-Bcl-2 (1:1000, Abcam, Shanghai, China), anti-Bax (1:1000, Abcam, Shanghai, China), and anti-Bak (1:10,000, Abcam, Shanghai, China).
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5

Western Blot Analysis of Apoptosis Proteins

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Total protein was extracted with Whole Cell Lysis Assay kits (KeyGEN BioTECH) following the manufacturer’s protocol. Protein extracts (30 μg) in each condition were loaded onto SDS-PAGE gels, transferred to PVDF membrane, and probed with the anti-P-Akt (Ser473) (Cell Signaling Tech, 1:2000), anti-PUMA (Santa Cruz, USA, 1:500), anti-NOXA (Abcam, UK, 1:1000), anti-BAX (Santa Cruz, USA, 1:500), anti-BAK (Abcam, UK, 1:1000), anti-BID (Proteintech, China, 1:1000), anti-BCL2 (Santa Cruz, USA, 1:500), anti-BCL-XL (Abcam, UK, 1:1000), anti-MCL1 (Abcam, UK, 1:2000), anti-P53 (Abcam, UK, 1:2000) antibodies, or anti-α-TUBULIN antibody (Beyotime Biotechnology, China, 1:5000). Signals were detected using enhanced chemiluminescence reagents (Thermo Scientific, USA).
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6

Western Blot Analysis of Protein Expression

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Protein extraction kit (Solarbio, China) was used to isolate proteins, and then the concentration of the proteins was detected by BCA Protein Assay kit (Cwbio, China). The cell lysate was loaded on 10% SDS-PAGE after being boiled for 5 min to denaturation and then transferred onto a PVDF membrane (Millipore, USA). The non-specific antigens were blocked using 5% skimmed milk. Primary antibodies were incubated at 4 °C overnight. After removing the appropriate horseradish peroxidase-conjugated secondary antibody (ab97051, 1:3000, Abcam, USA), the blots were detected using Enhanced Chemiluminescence Detection kit (GE Healthcare Biosciences). The primary antibodies used in the experiment were as follows: N-cadherin (ab18203, 1:1000), Vimentin (ab137321, 1:1500), anti-PAX8 (ab53940,1:200), anti-p-Erk1/2 (ab201015, 1:1000), anti-Bcl-2 (ab593480, 1:700), anti-Bax (ab53154, 1:1000), anti-Bak (ab32371, 1:10,000) purchased from Abcam. E-cadherin (3195, 1:1000), anti-p-Akt (Thr308) (13,038, 1:1000), p-JNK1/2(4668, 1:2000), anti-GAPDH (5174, 1:1000), anti-β-actin (4970, 1:1000) purchased from Cell Signaling Technology.
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