For the ds–ss–ds, in this article, mentioned as gap substrate, three DNA fragments of 400, 600, and 1440 bp were amplified from pBR322 plasmid by PCR using the pairs of primers biotin-2574+ and Cy5-2974− (400 bp), biotin-3413+ and Cy5-4014− (600 bp), and 2574+ and biotin-4014− (1440 bp). The three nonbiotinylated ssDNA fragments were purified by elution on HiTrap Streptavidin HP column and annealed at equimolar concentrations in molecules as described then purified on the anion exchange MiniQ column mentioned above.
Hitrap streptavidin hp column
The HiTrap Streptavidin HP column is a pre-packed chromatography column used for the purification of biotinylated molecules. The column contains streptavidin, a protein that binds strongly to biotin, allowing for the capture and purification of biotinylated proteins, peptides, nucleic acids, or other biomolecules from complex samples.
5 protocols using hitrap streptavidin hp column
Preparation of DNA Fragments for Biophysical Studies
For the ds–ss–ds, in this article, mentioned as gap substrate, three DNA fragments of 400, 600, and 1440 bp were amplified from pBR322 plasmid by PCR using the pairs of primers biotin-2574+ and Cy5-2974− (400 bp), biotin-3413+ and Cy5-4014− (600 bp), and 2574+ and biotin-4014− (1440 bp). The three nonbiotinylated ssDNA fragments were purified by elution on HiTrap Streptavidin HP column and annealed at equimolar concentrations in molecules as described then purified on the anion exchange MiniQ column mentioned above.
Extraction and Analysis of tRNA Asp GUC
mL of cultures of the different S. pombe strains
grown in YPD (1% yeast extract, 2% peptone, 2% dextrose, BD Difco
YPD) or 0.5% yeast extract (Difco), 2% bactopeptone (Difco), and 3%
dextrose (Fluka) at 30 °C, as described previously.85 (link) tRNAAspGUC was extracted
from bulk tRNA using a biotinylated primer (5′biotin-GCAAGCGTGACAGGCTTG-3′,
Integrated DNA Technologies) bound to a HiTrap Streptavidin HP column
(1 mL, GE Healthcare Life Sciences).85 (link) Twenty-five
micrograms of tRNAAspGUC was digested to nucleosides
that were then separated by LC–MS.85 (link) To compare tRNA concentrations, we compared the ratio of the levels
of the modified bases Q (410 m/z) and m5C (258 m/z)
in each sample by integrating the peak area from the extracted ion
chromatograms. All tRNA extractions and analysis for Q content were
performed at least twice independently.
Purification and Characterization of Egg Yolk IgY
Biotinylation and Immobilization of Peptides for Binding Assays
Purification of Biotinylated OmCI Protein
The column was equilibrated with 5× column volume of PBS. Ammonium sulfate precipitated serum was loaded at a flow rate of 0.5 ml/min, and a 5× column volume wash with PBS at a flow rate of 1 ml/min was performed. C5 was eluted and collected in fractions, using an isocratic elution of 5× column volume of 20 m
Immediately after elution, the fractions were pooled and injected onto a HiLoad 16/600 Superdex 200-pg gel-filtration column (GE Healthcare) that had been pre-equilibrated with PBS. The column was run at 1 ml/min, and all peaks were collected. The peaks were analyzed by SDS–PAGE, and those with a molecular weight consistent with C5 monomer were pooled and stored at −80 °C.
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