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6 protocols using anti sars cov 2 n

1

Western Blot Analysis of SARS-CoV-2 Proteins

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Supernatant or infected Vero E6 cell samples containing VSV were mixed with sodium dodecyl sulfate-polyacrylamide (SDS) gel electrophoresis sample buffer containing 20% β-mercaptoethanol and heated to 99 °C for 10 min. Analysis of the samples was performed as described elsewhere (24 (link)). SARS-CoV-2 N or S expression was detected using anti-SARS-CoV-2 N or anti-SARS-CoV-2 S (1:1000; Sino Biological, Chesterbrook, PA, USA) antibody. Wildtype VSV samples served as a negative control for the N- and S-specific blots while a cell lysate of SARS-CoV-2 N was used as a positive control for the N-specific blot and negative control for the S-specific blot.
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2

SARS-CoV-2 Infection Characterization Protocol

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SARS-CoV-2 strain USA-WA1/2020 was obtained from BEI Resources, NIH, NIAHD (Cat # NR52281) and was plaque purified in Vero E6 cells to identify plaques lacking furin cleavage site mutations. A WT virus plaque was then propagated on Vero E6 cells stably expressing TMPRSS2 (kindly provided by Dr. Shan-Lu Liu, Ohio State University) for 72 h. The virus was aliquoted, flash-frozen in liquid nitrogen, and stored at −80C. The virus stock was titered on Vero E6 cells by TCID50 assay. For infection experiments, the virus was added to cells for 24 h. Cells were then collected by trypsinization and were either lysed with Trizol reagent for RNA extraction or were fixed with 4% paraformaldehyde in PBS for 1 h prior to staining for flow cytometry. Staining was performed with anti-SARS-CoV-2 N (Cat # 40143-MM08, Sino Biological) as described previously (28 (link), 66 (link)). Flow cytometry was performed on a FACSCanto II machine (BD Biosciences). Data were analyzed using FlowJo software.
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3

SARS-CoV-2 Protein Detection Protocol

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Total cell extracts were lysed in sample buffer containing SDS, protease and phosphatase inhibitors (Roche), β-mercaptoethanol, and a universal nuclease (Fisher Scientific). Proteins were resolved on an SDS polyacrylamide gel, transferred to a polyvinylidene difluoride (PVDF) membrane, hybridized with a primary antibody, reacted with an infrared (IR) dye-conjugated secondary antibody, visualized using a Li-COR Odyssey Imager (Li-COR), and analyzed using Image Studio software. Primary antibodies used for immunoblotting included anti-SARS-CoV-2 N (SinoBiological 40143-R001) and GAPDH (Millipore-Sigma G8795) monoclonal antibodies. Secondary IR antibodies were purchased from Li-COR.
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4

SARS-CoV-2 Infection and IFITM Expression Assay

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Cells were infected with SARS‐CoV‐2 for 24 h, after which cells were fixed with 4% paraformaldehyde (Thermo Scientific) for 1 h at room temperature, permeabilized with PBS containing 0.1% Triton X‐100, and blocked with PBS/2% FBS. Cells were then stained with mouse‐produced anti‐SARS‐CoV‐2 N (Sino Biological, 40143‐MM08) and a cocktail of rabbit‐produced anti‐IFITM2/3 (ProteinTech, 11714‐1‐AP) and rabbit‐produced anti‐IFITM1 (Cell Signaling Technologies, 13126S). Primary antibody labeling was followed by labeling with goat anti‐mouse Alexa Fluor 555 (Life Technologies, A‐21424) and donkey anti‐rabbit Alexa Fluor 647 (Life Technologies, A‐31573) secondary antibodies. Flow cytometry data were collected using a FACSCanto II flow cytometer (BD Biosciences). Data analysis was performed using FlowJo software. Infected cell gates were set using non‐infected control samples.
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5

Western Blot Analysis of SARS-CoV-2 Proteins

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Total cell extracts were lysed in sample buffer containing SDS, protease and phosphatase inhibitors (Roche), β-mercaptoethanol, and a universal nuclease (Fisher Scientific). Proteins were resolved on an SDS polyacrylamide gel, transferred to a polyvinylidene difluoride (PVDF) membrane, hybridized with a primary antibody, reacted with an infrared (IR) dye-conjugated secondary antibody, visualized using a Li-COR Odyssey Imager (Li-COR), and analyzed using Image Studio software. Primary antibodies used for immunoblotting included anti-SARS-CoV-2 N (SinoBiological 40143-R001, 1:5,000), anti-OAS3 (Cell Signaling 41440, 1:250), anti-PARP14 (Santa Cruz Biotechnology SC-377150, 1:100), and anti-GAPDH (Millipore-Sigma G8795, 1:5,000) antibodies. Secondary IR antibodies were purchased from Li-COR.
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6

SARS-CoV-2 Protein Extraction and Immunoblotting

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Total cell extracts were lysed in sample buffer containing SDS, protease and phosphatase inhibitors (Roche), β-mercaptoethanol, and a universal nuclease (Fisher Scientific) and boiled at 95°C for 5 minutes. Proteins were resolved on an SDS polyacrylamide gel, transferred to a polyvinylidene difluoride (PVDF) membrane, hybridized with a primary antibody, reacted with an infrared (IR) dye-conjugated secondary antibody, visualized using a Li-COR Odyssey Imager (Li-COR), and analyzed using Image Studio software. Primary antibodies used for immunoblotting included anti-SARS-CoV-2 N (SinoBiological 40143-R001, 1:5000), anti-OAS3 (Cell Signaling 41440, 1:250), anti-PARP14 (Santa Cruz Biotechnology SC-377150, 1:100), and anti-GAPDH (Millipore-Sigma G8795, 1:5000) antibodies. Secondary IR antibodies were purchased from Li-COR.
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