The largest database of trusted experimental protocols

5 protocols using nucelospin rna kit

1

Hyper-IL-6 Signaling and SOCS3 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ba/F3-gp130 cells were washed 3 times with PBS and serum starved for 2.5 h. 5 nM Hyper-IL-6 or 5nM sIL-6R/sIL-11R plus 5 nM IL-6/IL-11 were incubated with 1 μg/mL sgp130Fc variant for 20 min. Then, the cells were stimulated with the mixture for 1 h. Cells were harvested and the RNA was isolated using the NuceloSpin RNA Kit (Macherey-Nagel, Düren, Germany) according to manufacturers' instructions. The RNA concentration was measured on a ScanDrop2 (Analytik Jena, Jena, Germany) and 2 μg RNA were reversely transcribed into cDNA to a final volume of 20 μL using 5 μM Oligo-dT primer and the RevertAid Reverse Transcriptase (Thermo Fisher Scientific, Waltham, USA) according to manufacturers' instructions. For quantitative PCR, cDNA transcribed from 50ng RNA was analyzed using the SYBR Green Mastermix (Thermo Fisher Scientific, Waltham, USA) in a total volume of 10μL according to manufacturers' instructions. The PCR was performed on a QuantStudio 6 (Thermo Fisher Scientific, Waltham, USA). The samples were initially incubated at 95°C for 10 min followed by 40 cycles of 95°C for 15 s and 60°C for 60 s. The measurements were performed in triplicates. SOCS3 expression was normalized to GAPDH and the relative gene expression levels were calculated using the 2−ΔΔCt method.
+ Open protocol
+ Expand
2

Quantitative RT-PCR for Telomeric Repeat-containing RNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
For RT-qPCR of TERRA, 3x106 cells were harvested following transfection of the chimeric TERRA constructs. RNA was isolated with the NuceloSpin RNA kit (Macherey-Nagel). RT-qPCR for 15q TERRA was performed using our previously described protocol24 (link). To assess mRNA levels post siRNA transfections, we used ThermoFisher Scientific’s SuperScript III Reverse transcriptase and Power SYBR Green PCR Master Mix on an Applied Biosystems 7900HT Fast Real-Time System according to the manufacturer’s instructions.
+ Open protocol
+ Expand
3

Quantification of FLT3 Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell pellets were obtained on day three. RNA was isolated using NuceloSpin RNA kit (Macherey-Nagel, Duren, Germany). cDNA was synthesized using SuperScript VILO cDNA Synthesis Kit (Invitrogen). qPCR was performed using AriaMX (Agilent, Santa Clara, CA, USA). Amplified products were checked by dissociation curves, and expression was normalized to a housekeeping gene. Primer sequences used for FLT3 are listed in Supplementary Table S1.
+ Open protocol
+ Expand
4

Quantifying Gene Expression via qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using the NuceloSpin® RNA kit (Macherey-Nagel; Düren, Germany) following manufacturer’s instructions. The cDNA was synthesized from RNA using the Transcriptor First Strand cDNA Synthesis Kit (Roche; Basel, Switzerland) following manufacturer’s instructions. Gene expression was analyzed by qPCR using Brilliant III Ultra-Fast SYBR® Green QPCR Master Mix (Agilent Technologies; Santa Clara, California, USA) in a 7900HT Fast Real-Time PCR System (Thermofisher; Waltham, Massachusetts, USA). The data was analyzed with the 2–ΔΔCT method using GAPDH to normalize.
+ Open protocol
+ Expand
5

Quantitative RT-PCR for Telomeric Repeat-containing RNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
For RT-qPCR of TERRA, 3x106 cells were harvested following transfection of the chimeric TERRA constructs. RNA was isolated with the NuceloSpin RNA kit (Macherey-Nagel). RT-qPCR for 15q TERRA was performed using our previously described protocol24 (link). To assess mRNA levels post siRNA transfections, we used ThermoFisher Scientific’s SuperScript III Reverse transcriptase and Power SYBR Green PCR Master Mix on an Applied Biosystems 7900HT Fast Real-Time System according to the manufacturer’s instructions.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!