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6 protocols using fitc conjugated anti cd44

1

Evaluating Breast Cancer Stem Cells

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The expression of CD44 and absence of CD24 (CD44+/CD24) is characteristic of breast CSCs. To evaluate these, Hs578T and Hs578Ts(i)8 cell variants were seeded at 1 × 105 cells in a 6-well plate and allowed to attach overnight. They were subsequently trypsinised, blocked with 10% FCS in PBS and stained with APC-conjugated anti-CD24 (1:100) (eBioscience, San Diego, California, USA) and FITC-conjugated anti-CD44 (1:400) (eBioscience) for 30 min at 4 °C. Staining was assessed in a FACSCanto II flow cytometer, followed by analysis using BD FACSDiva software. To assess the effects of 2-DG on the CSC population Hs578T and Hs578Ts(i)8 cell variants were seeded at 1 × 105 cells in a 6-well plate and allowed to attach overnight. Cells were treated with 2-DG (final concentration 15 mM) for 24 hours. They were subsequently trypsinised, blocked with 10% FCS in PBS and stained with APC-conjugated anti-CD24 (1:100) (eBioscience, San Diego, California, USA) and FITC-conjugated anti-CD44 (1:400) (eBioscience) for 30 min at 4 °C. Staining was assessed in a FACSCanto II flow cytometer, followed by analysis using BD FACSDiva software.
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2

CD24, CD44, and PD-L1 expression in breast cancer cell lines

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HCC1954 and SKBR3 cell variants (1 × 105/well) were seeded in a 6-well plate and allowed to attach overnight. They were then trypsinised, blocked with 10% FCS in PBS and stained with APC-conjugated anti-CD24 (1:75 dilution, eBiosciences, UK) and FITC-conjugated anti-CD44 (1:800 for HCC1954, 1:400 for SKBR3, eBiosciences, UK) or APC-conjugated anti-PD-L1 antibody (1:800 for HCC1954, 1:400 for SKBR3, eBiosciences, UK) for 30 min at 4°C. For EV treatment, cells were seeded at 0.5 × 105 (HCC1954) or 1 × 105 (SKBR3 and EFM192A) cells/well in a 24-well plate and allowed to attach overnight. The following day, cells were washed with serum-free media, fed with media supplemented with extracellular vesicle (EV)-depleted-FBS and treated with EVs for a further 48 hr before staining as above. Staining was assessed in a FACSCanto II flow cytometer, followed by analysis with BD FACSDiva software.
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3

Isolation and Characterization of Tumor Cells

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Adherent cells were detached with 0.05% Trypsin (Corning, Manassas, VA), washed and re-suspended in phosphate buffered saline (PBS). Tumors were mechanically and enzymatically disaggregated into single-cell suspensions, as in [35 (link)]. 1×106 cells were incubated with PE-conjugated anti-CD133 and/or FITC-conjugated anti-CD44 (eBioscience, San Diego, CA; 12-1338-42 and 11-0441-82). Labeled cells were analyzed by LSR Fortessa Cell Analyzer (BD Bioscience). Data was analyzed with Flowjo software. At least three samples were analyzed in triplicate and a normal distribution was observed for biological replicates.
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4

Pluripotency Marker Expression Analysis

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Cells were fixed in 4% PFA and antigen retrieval was performed at 90°C. Slides were blocked in 1% BSA, 10% fetal bovine serum, and 0.2% Tween 20, and incubated at 4°C overnight with the primary antibodies anti-NANOG (1:1000, Cell Signaling), anti-ZSCAN4 (1:1000, Origene), anti-OCT3/4 (1:250, Santa Cruz Biotechnology), anti-BMI1 (1:1000), anti-SOX2 (1:500) (Cell Signaling), in blocking solution. The FITC-conjugated anti-CD44 (1:100, Invitrogen) was incubated for one hour on ice in blocking solution. Nuclei were stained with DAPI (Roche Life Sciences). Uninduced cells (Dox-) and cells stained without primary antibody were used as controls. Samples were visualized with fluorescent Alexa546, Alexa488 or Alexa647 secondary antibodies (Invitrogen) under a Zeiss 510-confocal microscope.
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5

Immunofluorescence Characterization of Pluripotent Markers

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Cells were fixed in 4% PFA and antigen retrieval was performed at 90 °C. Slides were blocked in 1% BSA, 10% fetal bovine serum, and 0.2% Tween 20, and incubated at 4 °C overnight with the primary antibodies anti-NANOG (1:1000, Cell Signaling), anti-ZSCAN4 (1:1000, Origene), anti-OCT3/4 (1:250, Santa Cruz Biotechnology), anti-BMI1 (1:1000), anti-SOX2 (1:500) (Cell Signaling), in blocking solution. The FITC-conjugated anti-CD44 (1:100, Invitrogen) was incubated for 1 h on ice in blocking solution. Nuclei were stained with DAPI (Roche Life Sciences). Uninduced cells (Dox−) and cells stained without primary antibody were used as controls. Samples were visualized with fluorescent Alexa546, Alexa488 or Alexa647 secondary antibodies (Invitrogen) under a Zeiss 510-confocal microscope.
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6

Profiling CD24 and CD44 Expression

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Single-cell suspension in PBS was incubated with PE-conjugated anti-CD24 (12-0247-42, Invitrogen) and FITC-conjugated anti-CD44 (11-0441-81, Invitrogen) in a dark humidity chamber for 30 min, followed by PBST-washing twice for 5 min each time. FACS analysis was performed by flow cytometry (BD Biosciences, Franklin Lakes, NJ, USA).
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