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6 protocols using pik 90

1

Neuroblastoma Cell Line Characterization

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Kelly, SH-SY5Y, SHEP, SK-N-SH, IMR32, SKN-Be2C, IMR5 and SK-N-AS human neuroblastoma cell lines were obtained from the University of California at San Francisco Cell Culture Facility (San Francisco, CA) and from the American Type Culture Collection (Manassas, VA). Cells were grown in DMEM or RPMI containing 10% fetal bovine serum (PAA “Gold”). In specified experiments, cells were serum starved in 0.2% FCS for 6 h before analysis and treated with recombinant human insulin-like growth factor-1 (IGF-1; Sigma) at 50ng/mL for 30 min before harvesting. NVP-BEZ235 (Novartis), Torin1 (Nathaniel Gray), staurosporine (Alexis Biochemicals), ZSTK474 (Alexis Biochemicals), GSK3β inhibitor (Calbiochem), TGX221 (Selleck chemicals), PIK90 (Selleck chemicals) and Rapamycin (Selleck chemicals) were all prepared as a 10mM stock solution in 100% DMSO. Working solutions were prepared freshly by dilution in 100% DMSO prior addition to the cell media at a final concentration of 0.1% DMSO. SHEP cells were stably transfected with constructs wild-type or mutant for MYCN and appropriate clones were screened and selected essentially as described previously [37 (link)]. Cells were regularly screened for Mycoplasma using a PCR-based assay (VenorGem, Minerva Biolabs).
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2

Culturing T-ALL Cell Lines

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Human T-ALL cell lines Jurkat and Loucy (PTEN deleted), DND-41 and ALL-SIL (PTEN non deleted) were cultured in RPMI-1640 medium (Life Technologies Italia, Monza, Italy) supplemented with 10–20% fetal bovine serum (Life Technologies), 100 U/ml penicillin and 100 μg/ml streptomycin (Sigma-Aldrich, Saint Louis, MO, USA) at 37°C in a humidified atmosphere of 5% CO2. PI3K inhibitors BKM-120, PIK-90, ZSTK-474, A-66, TGX-221, AS-605240, CAL-101 and IPI-145, the caspase inhibitor z-VAD and the autophagy inhibitor 3-MA, were from Selleck Chemicals (Houston TX, USA).
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Ovarian Cancer Cell Line Characterization

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OVCAR8, OVCAR4, OVCAR3, EFO21, and DOV13 were obtained from National Cancer Institute. SKOV3 was from American Type Culture Collection. The cell lines were maintained in RPMI-1640 media (Gibco, Carlsbad, CA) supplemented with 5% fetal bovine serum (FBS) (Gibco), and 1% penicillin–streptomycin at 37 °C and 5% CO2. Cell lines were authenticated using short tandem repeat DNA profiling and tested with negative mycoplasma contamination. PI3K inhibitors (GDC-0941, PIK-90, A66, BYL719, and TGX-221), AKT inhibitors (MK-2206 and GDC-0068), and AXL inhibitor (BGB324) were obtained from Selleckchem (Houston, TX). AXL inhibitor (TP-0903) was purchased from ApexBio (Houston, TX). PDK1 inhibitors (OSU-03012 and GSK2334470) and SGK1/2 inhibitor (GSK650394) were purchased from Santa Cruz Biotechnology (Dallas, TX). The used doses of the inhibitors in vitro are as follows: GDC-0941, 10 µM; PIK-90, 10 µM; A66, 2 µM; BYL719, 2 µM; TGX-221, 10 µM; MK-2206, 5 µM; GDC-0068, 5 µM; BGB324, 1 µM; TP-0903, 0.5 µM; OSU-032012, 5 µM; GSK2334470, 2 µM; and GSK650394, 10 µM.
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4

Pharmacological Inhibitor Resuspension

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AS-605240, AS-252424 and GDC0941 were purchased from Selleckchem; PIK90, PI-103, BH9, TGX221, SW30, SW14, PIK92 and INK128 were gifts from Kevan Shokat laboratory, UCSF. All inhibitors were resuspended in DMSO at 10 mM and used at final concentration of 10 μM, unless otherwise indicated.
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5

Cell Culture and Reagent Sourcing

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Cell culture reagents were purchased from Invitrogen (Carlsbad, CA, USA), Lonza (Basel, Switzerland), or Cellgro (Manassas, VA, USA). All cells, except for SUM149PT, were obtained from the Tissue Culture Shared Resource of Georgetown University Medical Center (Washington, DC, USA) and maintained in the Dulbecco's Modified Eagle Medium (DMEM; Lonza) containing 10% heat inactivated fetal bovine serum (FBS; HyClone, Logan, UT, USA or Omega Scientific, Tarzana, CA, USA) and 100 units ml−1 penicillin/streptomycin (Lonza). SUM149PT was maintained according to manufacturer's recommendation (Asterand, Detroit, MI, USA). The viability of cultured cells was monitored by the trypan blue dye-exclusion method using the Luna Automated Cell Counter (Logos Biosystems, Gyeonggi-do, Korea). Protein kinase inhibitors were purchased from the following sources: CHIR-99021, GDC-0941, GSK1059615, IC-87114, MK-2206, PI-103, PIK-75, PIK-90, TG100-115, TGX221 and WYE-354 from Selleck Chemicals (Houston, TX, USA); BEZ235 and ZSTK474 from LC Labs (Woburn, MA, USA). Bafilomycin A1, MG132 and rapamycin were purchased from Sigma (St Louis, MO, USA). Stock solutions of compounds, except for BEZ235, were made in dimethyl sulfoxide and stored at −20 °C in small aliquots. BEZ235 was dissolved in dimethylformamide.
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6

Immortalized Human Keratinocyte Culture

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Keratinocytes (courtesy of Leena Bruckner-Tuderman, Department of Dermatology, University Hospital Freiburg) isolated from human foreskin were transformed with the human papillomavirus oncogenes E6 and E7 for immortalization (Kaur and McDougall, 1988 (link)). Cells were kept in Keratinocyte Serum-Free Medium (KSFM; Invitrogen, Carlsbad, CA) supplemented with 0.3 ng/ml recombinant EGF and 30 ng/ml bovine pituitary extract and 100 U/ml penicillin/streptomycin (culture medium). The experiment medium contained an additional 20 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (Sigma-Aldrich, St. Louis, MO). For pH experiments, the medium was adjusted to a pH of 7.45 by 2.5 N NaOH or to 6.6 by 10% HCl. The inhibitors CK-666 (Sigma-Aldrich), NSC-23766 (Tocris, Bristol, UK), ZCL-278 (Tocris), PIK-90 (Selleck Chemicals, Houston, TX), AG-1478 (Cayman Chemicals, Ann Arbor, MI), Y-27632 (Merck-Millipore, Billerica, MA), (–)-blebbistatin (Sigma-Aldrich), suramin (Tocris), pertussis toxin (Enzo Scientific, Farmingdale, NY), gallein (Tocris), telenzepine (Tocris), PPADS (Tocris), and CK-689 (Merck-Millipore) were used at the indicated concentrations.
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