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5500 q trap lc ms ms

Manufactured by AB Sciex
Sourced in United States, Japan

The 5500 Q TRAP LC-MS/MS is a liquid chromatography-tandem mass spectrometry (LC-MS/MS) system. It is designed to provide high-sensitivity and high-throughput quantitative analysis of a wide range of analytes. The system combines a triple quadrupole mass analyzer with a linear ion trap, enabling both quantitative and qualitative analysis capabilities.

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3 protocols using 5500 q trap lc ms ms

1

Fatty Acid and Amino Acid Analysis

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Prior to FAA analysis, 80 mg of tissue was homogenized, and 1000 ul pre-treatment solution (acetonitrile: water 1:1) was added. The suspensions were then shaken for 60 min. Next, the samples were centrifuged at 13200 rpm/min for 10 min, and the supernatants were collected. The supernatant fluids were used to determine FAA composition using liquid chromatography-mass spectrometry (Liquid phase: LC-20AD, Shimadzu, Japan; Mass Spectrometry: 5500 Q TRAP LC-MS/MS, AB SCIEX, USA). Pretreatment of fatty acid samples was accomplished by homogenizing 100 mg of tissue. Next, 2 ml of n-hexane was added, and shaken at 50 °C for 30 min, at which point 3 ml of KOH methanol solution (0.4 mol/L) was added. The samples were then shaken for 30 min at 50 °C. Next, 1 ml of water and 2 ml of n-hexane were added, and the samples mixed. The mixture was then allowed to stand for stratification. The upper layer was collected, and fatty acids were detected using gas chromatography-mass spectrometry (GC-MS 7890B-5977A, Agilent, USA).
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2

Adenosine Quantification by LC-MS/MS

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500 μL of blood was mixed 1:2 with 138 mM NaCl, 8 mM Na2HPO4, 2 mM KH2PO4, 3 mM KCl, 5.9 mM NaHCO3, 5.6 mM dextrose, 2.15 mM CaCl2, 1% DMSO, and 120 μM dipyridamole. Samples were centrifuged at 3650 × g for 10 min at 4° and proteins precipitated by addition of 2% v/v of 70% (12N) perchloric acid with re-centrifuged at 3650 × g for 10 min at 4°C. Adenosine was determined on a 5500 QTRAP LC/MS/MS (AB Sciex, Foster City, CA) with a 1200 series HPLC (Agilent Technologies, Santa Clara, CA). LC separation was performed on a Phenomenex Kinetex 2.6 u PFP column (4.6 × 100mm) (Torrence, CA). Mobile phase A was 0.1% formic acid in water. Mobile phase B was 0.1% formic acid in acetontrile. Flow rate was 0.3 mL/min and the linear gradient was: 0-1 min, 100% A; 5 min, 90% A; 10 min, 80% A; 12-18 min, 0% A; and 18.5-25 min, 100% A with an auto-sampler temperature of 5°C. The injection volume was 5 μL. Mass spectra were acquired with positive electrospray ionization with an ion spray voltage of 5500 V at a source temperature of 450 °C. The curtain gas, ion source gas 1 and ion source gas 2 were 35, 50, and 65, respectively. Multiple reaction monitoring was used to quantify adenosine m/z 268.1 --> m/z 136.1, inosine m/z 269.1 --> m/z 137.1 and internal standard caffeine m/z 195.1 --> m/z 138.1.
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3

Quantitative Analysis of FAA and Fatty Acids

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Free amino acid (FAA) and fatty acid compositions were determined according to a previous article [1 (link)]. FAA composition was measured using liquid chromatography–mass spectrometry (Liquid phase: LC-20AD, Shimadzu, Japan; Mass Spectrometry: 5500 Q TRAP LC-MS/MS, AB SCIEX, Framingham, MA, USA), and gas chromatography–mass spectrometry (GC-MS 7890B-5977A, Agilent, Palo Alto, CA, USA) was used to detect fatty acid composition.
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