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7 protocols using sc 803

1

Immunofluorescence Analysis of PTX3 in Lung Cells

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HFL1 cells were grown on coverslips and treated with or without 100 ng/ml His‐PTX3 fusion protein for 24 h. Cells were fixed in 4% paraformaldehyde for 20 min and incubated with antibodies against His (sc‐803, Santa Cruz) and CD44 (GTX83114, GeneTex). For lung sections, samples were incubated with PTX3 (1:100, ab90806; Abcam), fibronectin (1:350 dilution, #15613‐1‐AP, ProteinTech) and α‐SMA (1:100 dilution, GTX100904, GeneTex) at room temperature for 1 h. Samples were incubated with Alexa 568‐ or 488‐conjugated secondary antibodies (Invitrogen) at a 1:200 dilution. The samples were washed with 0.1% Tween 20 in PBS and stained with DAPI (P36935, Invitrogen) on coverslips. The fluorophores were excited by a laser at 405, 488, or 543 nm and observed using an FV‐3000 confocal system (Olympus). Randomly chosen fields were photographed at ×200 magnification under a fluorescence microscope.
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2

Visualization of His-PTX3 Protein Binding

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MDA‐MB‐231 treated with His‐PTX3 fusion protein for 24 h. Four percent paraformaldehyde was used to fix the cells for 20 min. Cells were then incubated with antibody against CD44 (GTX83114; GeneTex) or His (sc‐803; Santa Cruz Biotechnology). In immunofluorescence, the samples were stained with Alexa488‐ or 568‐conjugated secondary antibodies (Invitrogen). The fluorophores were excited by a laser at 405, 488 or 543 nm and were observed using the FV‐1000 confocal system (Olympus).
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3

Antibody Sources and Compound Details

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Antibodies against AR (AR-N20, N terminus, rabbit polyclonal; sc-816, Santa Cruz Biotechnology), PSA (clone ER-PR8, mouse monoclonal; M0750, Dako) and anti-His (H-15; sc-803, Santa Cruz Biotechnology) were from the sources indicated. β-Actin antibody (AC-15, mouse monoclonal; ab6276) and anti-biotin (rabbit polyclonal; ab1227) were from Abcam. STAT3 (mouse monoclonal, 124H6) was from Cell Signaling Technology. Anti-streptavidin (IRDye® 680LT streptavidin, LIC-926-68030) was from LI-COR Biosciences. SINT1 is a natural compound (7 (link)), and LPY19, LPY30, LPY31, and EPI-053 were synthesized (5 (link)). EPI-002 was provided by NAEJA Pharmaceutical Inc. The synthetic androgen R1881 was purchased from PerkinElmer Life Sciences. Enzalutamide (MDV-3100) was purchased from Omega Chem. Bicalutamide was a gift from Dr. Marc Zarenda, AstraZeneca Pharmaceuticals. Interleukin-6 was purchased from R&D Systems (Minneapolis, MN). RPMI 1640 medium was purchased from Life Technologies. All other chemicals including progesterone (4-pregnene-3,20-dione) and dexamethasone were obtained from Sigma-Aldrich unless otherwise stated. PSA (6.1 kb)-luciferase, probasin (PB)-luciferase, PRE-luciferase, GRE-luciferase, 5xGal4UAS-TATA-luciferase, AR(1–558)-Gal4 DNA-binding domain (DBD), AR-YFP, and ARvar567es have been described (4 (link), 8 (link)).
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4

Western Blot Analysis of Recombinant Proteins

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The purified recombinant proteins (4 µg/lane) were subjected to SDS-PAGE using 10% gels and then transferred to polyvinylidene difluoride membranes. Non-specific binding was blocked for 1 h with 2% bovine serum albumin (BSA) in PBS (pH 7.4) containing 0.1% Tween 20 at 25 °C. The membranes were incubated overnight in a solution containing anti-His antibody (Santa Cruz Biotechnology, sc-803) or anti-c-myc antibody (Santa Cruz Biotechnology, sc-40). The bands were visualized with ECL western blot detection kit (GE Healthcare)35 (link).
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5

Western Blot Analysis of RHT-D1A and Ape1L

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Next, 0.5–1.0 μg of each protein preparation was spotted onto a dry polyvinyl difluoride membrane (Pierce PVDF Transfer Membrane) and dried. The membranes were blocked with 5% nonfat dry milk in 1× Tris-buffered saline containing Tween 20 (TBST; 50 mM Tris-HCl pH 7.6, 150 mM NaCl, 0.005% of Tween 20) for 1 h at room temperature. After that, the membranes were incubated in blocking buffer containing the anti-RHT-D1A (1:10,000 dilution in the blocking solution with 0.1% of Tween 20) or anti-Ape1L polyclonal antibody (1:5000 dilution in the blocking solution with 0.1% of Tween 20) on a rocker overnight at 4 °C. The membranes were then washed thrice in 1× TBST and incubated with a goat anti-rabbit antibody (ab6702, Abcam, Cambridge, UK) at a 1:20,000 dilution on a rocker for 1 h at room temperature. Next, each membrane was washed five times in 10 mL of 1× TBST for 5 min each time. A working substrate solution was prepared by mixing equal volumes of a H2O2 solution and luminal/enhancer solution. Each membrane was incubated in the working solution for 2 min in darkness, and Kodak X-Omat was exposed to the membrane. The 6xHis-tagged RHT-D1A protein was also detected with the anti-His antibody raised in rabbits (1:1000 dilution; sc-803; Santa Cruz Biotechnology) and an anti-rabbit Ig horseradish peroxidase–conjugated antibody (1:10,000 dilution).
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6

In vitro GST Pull-down Assay for TRIM21-mutp53 Interaction

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In vitro GST pull-down assays were performed as we previously described (65 (link)). In brief, E. coli (BL21 DE3 strain) transformed with GST-TRIM21 or His-mutp53 (R175H) vectors was induced with 0.4 mM IPTG for 16 hours at 16°C to express GST-TRIM21 or His-mutp53 (R175H) proteins. The purified GST-TRIM21 proteins were immobilized on Glutathione-Sepharose beads (GE Healthcare, 17-0756-01), which were then incubated with purified His-mutp53 (R175H) or His-wtp53 proteins. GST protein alone was used as a negative control. After washing, proteins bound to the beads were analyzed by Western blot assays using an anti-His (Santa Cruz Biotechnology, sc-803) or anti-GST antibody (Santa Cruz Biotechnology, sc-138).
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7

Immunoprecipitation and GST Pull-down Assays

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RCC cells were collected and lysed with RIPA (C1053, Beijing Pulley Gene Technology Co., Ltd.) containing protease inhibitor cocktail (HY-K0010, MCE, Shanghai, China). The proteins obtained were incubated with primary antibodies at 4 °C overnight. Protein A/G-agarose beads (36403ES08, Yeasen, Shanghai, China) were added for 4 h to obtain immunoprecipitates, which were then puri ed for at least three times in lysis buffer. Puri ed complexes were treated by 2×SDS loading buffer, boiled, electrophoresed and assayed by Western blot. Antibodies used include: anti-Flag (AE005, 1:100, mouse antibody, abclonal), and anti-Myc (AE070, 1:50, rabbit antibody, abclonal).
GST Pull-down assay E. coli (BL21 DE3 strain) transformed with GST-NEDD4L or His-CPE55 vectors was induced with 0.4 mM IPTG at 16 o C for 16 h, to express GST-NEDD4L or His-CPE55 proteins. Puri ed GST-NEDD4L proteins (200 ng) were immobilized on glutathione-agarose beads (G0924-1ML, Millipore, USA), which were then incubated with puri ed HIS-CPE55 proteins (200 ng). GST protein alone served as a negative control.
After washing, Western blot assay was performed to analyze the proteins bound to the beads using anti-His (catalog sc-803, Santa Cruz Biotechnology Inc., 1:1000) or anti-GST antibody (catalog sc-138, Santa Cruz Biotechnology Inc., 1:5000).
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