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Tripletof 5600 mass spectrometry

Manufactured by AB Sciex
Sourced in United States

The TripleTOF 5600 is a high-resolution, high-mass accuracy mass spectrometer designed for comprehensive quantitative and qualitative analysis. It features a hybrid quadrupole time-of-flight (QTOF) configuration, providing both high-resolution MS and MS/MS capabilities.

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3 protocols using tripletof 5600 mass spectrometry

1

UHPLC-QTOF-MS for Metabolite Profiling

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Ultra (high) performance liquid chromatography (UHPLC) separation was carried out using an ExionLC Infinity series UHPLC System (AB Sciex), equipped with a UPLC BEH Amide column (2.1 × 100 mm, 1.7 μm, Waters). The mobile phase consisted of 25 mmol/L ammonium acetate and 25 mmol/L ammonia hydroxide ( CNW Technologies) in water (pH = 9.75) (A) and acetonitrile (B). The analysis was carried out with an elution gradient. The column temperature was 25℃. The autosampler temperature was 4 ℃, and the injection volume was 2 μL (pos) or 2 μL (neg), respectively.
TripleTOF 5600 mass spectrometry (AB Sciex) was used for its ability to acquire MS/MS spectra on an information-dependent basis (IDA) during LC/MS experiments. In this mode, the acquisition software (Analyst TF 1.7, AB Sciex) continuously evaluates the full scan survey MS data as it collects and triggers the acquisition of MS/MS spectra depending on preselected criteria. In each cycle, the most intensive 12 precursor ions with intensity above 100 were chosen for MS/MS at a collision energy (CE) of 30 eV. In the detection process, standard products and blank controls were strictly used for quality control, and data quality control was also carried out. The UHPLC-QTOF-MS analysis was performed at Biomarker Technologies Corporation, Beijing, China (https://international.biocloud.net/).
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2

Quantitative Protein Expression Analysis

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To further verify the expression of the DEPs, we further quantified the expression levels of the 4 selected proteins by PRM analysis using the remaining cryopreserved hippocampus samples (N = 6, 3 in each group). The method of protein extraction and trypsin digestion was the same as iTRAQ experiment, then peptide samples were analyzed using TripleTOF 5600+ mass spectrometry combined with Eksigent microLC system (AB SCIEX, Framingham, MA, USA). The obtained MS/MS data were processed using ProteinpilotTM V4.5 search engine, then processed with Skyline software to obtain PRM spectrum files and the quantitative information of proteins.
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3

Quantification of Cortisol and Cortisone by LC-MS/MS

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To confirm dysregulation of the C21-steroid hormone biosynthesis pathway through two metabolites (cortisol and cortisone), LC-MS/MS analysis was performed according to the methodology described by Peti et al. [29] . In summary, the LC-MS/MS was carried out on a Nexera Ultra-High Performance Liquid Chromatographic (UHPLC) system by Shimadzu (Kyoto, HO, JP) and a TripleTOF® 5600+ mass spectrometry from AB Sciex (Foster, CA, USA) equipped with a Turbo-V IonSpray and Calibrant Delivery System (CDS), operated in positive mode. Mobile phases used for chromatographic separation were formic acid 0.1% (A) and acetonitrile, containing 0.1% formic acid in both. The column was an Ascentis Express C18 (100 x 2.1 mm; 2.7 µm) from Supelco (St. Louis, MO, USA). A flow rate of 0.5 mL•min -1 and an injection volume of 10 μL were used. The gradient condition was described in Appendix S1 (Table S1). The optimized MS parameters were as follows: gas1: 60 psi;
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