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18 protocols using dual luciferase reporter gene assay kit

1

miR-200c-3p Regulates RIP2 Expression

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According to the website (http://www.targetscan.org/vert_72/) prediction, a potential target site of miR-200c-3p (nucleotides 138-145 bp) was found on the 3’UTR (297 bp) of RIP2. The 3’UTR containing wt (GCAGTATT) or mutated RIP2 target site (CGTCATAA) was inserted into the luciferase reporter plasmid pmirGLO (Promega, China). 293T cells (Shanghai Zhong Qiao Xin Zhou Biotechnology Co., Ltd, China) were seeded into 24-well plates and co-transfected with 250 ng luciferase reporter plasmid and 10 pmol miR-200c-3p mimics using lipofectamine 2000 (invitrogen, USA). After 48 h, the luciferase activity was measured using the dual luciferase reporter gene assay kit (KeyGen, China) in accordance with the manufacturer’s instructions. The luciferase activity of firefly in each transfection well was normalized to renilla luciferase activity. Each sample was set to three replicates.
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2

Luciferase Assay to Validate DUSP1 3'UTR Regulation by miR-200c

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Briefly, the 293T cells purchased from Shanghai Zhong Qiao Xin Zhou Biotechnology were cultured in DMEM (Dulbecco’s modified eagle medium, Gibico) containing 10% fetal calf serum at 37°C under 95% humidity and 5% CO2. Subsequently, the pmirGLO-DUSP1-3’UTR-wt (Genscript, Nanjing) or pmirGLO-DUSP1-3’UTR-mut vector (Genscript, Nanjing), along with the miR-200c mimic or the mimic-control, were transfected with Lipofectamine ® 2000 into 293T cells. Following 48 h, the cells were then lysed using passive lysis buffer, and the luciferase activity was measured using a Dual-Luciferase Reporter Gene Assay Kit (KeyGEN BioTECH, China). Renilla luciferase activity was used for the normalization of the firefly luciferase activity. The luciferase enzyme activity was presented as fold-change relative to the vehicle control.
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3

Validating CircRNA-miRNA-mRNA Interactions

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Based on the bioinformatics analysis performed on the Bielefeld Bioinformatics Server (BiBiServ,
https://bibiserv.cebitec.uni-bielefeld.de/), miR-148a-3p and miR-20a-5p were predicted to be the downstream targets for hsa_circ_0013880. USP32 was predicted to be a downstream target for miR-148a-3p and miR-20a-5p. To further verify these predictions, the 3′-UTR or mutant sequences of USP32 mRNA (wt-USP32 or mut-USP32) and the fragments of wild-type (wt)-hsa_circ_0013880 and mut-hsa_circ_0013880 were cloned into the pmirGLO vectors (General Biol). For luciferase assay, pmirGLO vectors (pmirGLO-wt-USP32, pmirGLO-mut-USP32, pmirGLO-wt-hsa_circ_0013880 or pmirGLO-mut-hsa_circ_0013880) and miRNA mimics (miR-148a-3p/NC mimics or miR-20a-5p/NC mimics) were cotransfected into 293T cells. After 48 h, the luciferase activities were detected by using a dual luciferase reporter gene assay kit (KeyGEN, Nanjing, China).
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4

Dual Luciferase Assay for FKBP3 Regulation

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When the cells grew to 90% confluency, HEK‐293 cells and DB cells were seeded in 12‐well plates. HEK‐293 cells were transfected with plasmids and Lipo8000 transfection reagent. Plasmids included TOPflash reporter (Addgene, Cambridge, MA, USA), pRL‐TK, vector 1 or oeFKBP3. In another experiment, the promoter region of FKBP3 was cloned into the pGL3‐enhancer reporter vector and then co‐transfected into DB cells with FOXO3 overexpression plasmid and pRL‐TK. After 48 h, cells were lysed for the luciferase assay and the assay was performed using a dual luciferase reporter gene assay kit (KeyGEN).
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5

CD27-AS1 Regulates miR-224-5p/PBX3 Axis

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AML cells (HL-60 and KG-1) were used to perform the dual-luciferase reporter assay. Potential binding sequences between CD27-AS1 and miR-224-5p, and miR-224-5p and PBX3 were predicted using Starbase and TargetScan. Cells were co-transfected with the luciferase plasmid pmirGLO (#E133A, Promega, Beijing, China) containing predicted wildtype or mutant sequences of binding targets and miR-224-5p mimic (or mimic-NC) through transfection reagent Lipofectamine 2000 (Invitrogen, NY, USA) according to manufacturer’s instruction. Relative luciferase activities (three replicates for each) were evaluated through the ratio of firefly luciferase to renilla luciferase using Dual-Luciferase Reporter Gene Assay Kit (Keygen Biotech) in accordance with the manufacturer’s protocol.
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6

Luciferase Assay for SH3RF2 Depletion

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Stable cell lines with depletion of SH3RF2 were transfected with 1.5 μg pAP1-TA-luc reporter plasmids (Beyotime) and 1.5 μg pRL-TK plasmids (Promega, USA) Lipofectamine 3000 (Invitrogen, USA) following manufacturer’s instructions. One microgram pAP1-TA-luc reporter plasmids and 1 μg pRL-TK plasmids were transfected with 30 pmol RBPMS siRNA into stable cell lines with depletion of SH3RF2 by Lipofectamine 3000. The relative activity of luciferase was measured using the Dual Luciferase Reporter Gene Assay Kit (KeyGEN) as per the manufacturer’s protocols. The firefly luciferase activity was normalized to the renilla luciferase activity.
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7

Quantifying STAT6 Activation in HEK293T Cells

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SOX11 luciferase reporter plasmids (Figure 5a) and STAT6 overexpression vector (STAT6-OE) were constructed for luciferase assay and transfected into HEK293T cells using Lipofectamine 3000 (Invitrogen, Carlsbad, USA). After 24 h, cells were treated with IL-13 (50 ng/ml) for 1 h. Dual Luciferase Reporter Gene Assay Kit (KeyGEN, Jiangsu, China) was used to measure luciferase activity, following the manufacturer’s instructions.
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8

Mob1b Promoter Activity Assay

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In dual-luciferase reporter assay, 293T cells (Zhong Qiao Xin Zhou Biotech, Shanghai, China) were cultured at Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine
serum (FBS) and used as tool cells. The pGL3 containing Mob1b promoter (pGL3-Mob1b-Promoter), GLIS3 overexpression plasmid (GLIS3-OE +
pGL3-Mob1b-Promoter) and corresponding empty vector plasmid (Vector + pGL3-Mob1b-Promoter) were constructed. The 293T cells were transfected with these
recombinant pGL3 plasmids and the pRL-TK plasmid using Lipo3000 (Invitrogen, Carlsbad, CA, USA). Relative luciferase activity was determined using Dual-Luciferase Reporter Gene Assay Kit
(KeyGEN Bio TECH, Nanjing, China). The full length of Mob1b promoter is 3000 bp (−2,984–+16 bp). And mouse Mob1b promoter sequence was used in a
dual-luciferase reporter assay.
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9

LAPTM5 Promoter Activity in Breast Cancer

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Breast cancer MDA-MB-231 cells (8×104 cells per well) were seeded in 24-well plates. After cells reached 70%, the cells were co-transfected with pGL3-basic (General Biosystems Co., Ltd.) or pGL3-LAPTM5 promoter sequence and pcDNA3.1 (Chongqing Unibio Biological Technology Co., Ltd.) or pcDNA3.1-FOXP3. A Renilla luciferase plasmid was transfected together with a constructed plasmid for normalizing the efficiency of transfection. After 48 h, the luciferase activity was measured with a Dual-Luciferase Reporter Gene Assay kit (Nanjing KeyGen Biotech Co., Ltd.).
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10

Dual Luciferase Assay for HIF-1α in Breast Cancer

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Dual luciferase reporter gene assay kit (KGAF040, KeyGEN BioTech, China) according to the manufacturer’s instruction. The NREP promoter region was inserted into the pGL3-Basic vector (BR014, Fenghui Bio, China) and co-transfected with pRL-TK, siNC, or si-HIF-1α into BC cells. HIF-1α siRNA was synthesized by General Biosystems (China). HIF-1α siRNA: 5ʹ-CAGAAAUGGCCUUGUGAAATT-3ʹ, 5ʹ-UUUCACAAGGCCAUUUCUGTT-3ʹ. After 24 h, BC cells were cultured in normoxia (N) or hypoxia (H) for another 24 h. After transfection, cells were treated with 250 μL lysis buffer. Then, 100 μL firefly luciferase detection reagent and 20 μL sample were added to each well, and the mixture was gently blown before reading. After that, 100 μL renilla luciferase detection reagent was added to each well. Luciferase activity was measured with a multifunctional microplate reader (M200Pro, TECAN, Switzerland). The relative luciferase activity was calculated by firefly/renilla.
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