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6 protocols using sappβ

1

Western Blot Analysis of Alzheimer's Proteins

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Brain tissues were homogenized and sonicated in ice‐cold lysis buffer [50 mM Tris–HCl, pH 8.0, 140 mM NaCl; 1.5 mM MgCl2; 0.5% NP‐40 with complete protease inhibitor cocktail (Roche)]. Protein concentration was measured in the supernatant by BCA Protein Assay (Dingguo). The monoclonal or polyclonal antibodies used were BACE1 (Abcam, 1:1000); APP full length (A8717, Sigma, 1:3000); sAPPα (6E10, Covance, 1:1000); sAPPβ (Covance, 1:500); ADAM10 (Abcam, 1:1000); PSEN1 (Proteintech, 1:500); GAPDH (Proteintech, 1:10000); tau46 (CST, 1:1000); phosphorylation‐tau 181 (CST, 1:1000); phosphorylation‐tau 202 (Abcam, 1:5000); and phosphorylation‐tau 396 (Abcam, 1:10000). The secondary antibodies were goat anti‐rabbit or anti‐mouse horseradish peroxidase‐labeled antibodies (Proteintech, 1:5000). The membranes were visualized using an ECL reagent (Thermo) and a Fusion FX5 image analysis system (VilberLourmat). Relative protein intensities were calculated using Quantity One software (Bio‐Rad).
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2

Antibody Procurement for Neurodegenerative Research

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SNX15, EEA1 and Flag antibodies were purchased from Sigma Aldrich. Aβ (6E10) and sAPPβ antibodies were purchased from Covance. GAPDH, β-actin, MAP2, PSD95, NICD, CHC, and GFP antibodies were purchased from Cell Signaling Technology. Myc (9E10) antibody and mouse IgG were purchased from Santa Cruz Biotechnology. GFAP antibody was purchased from Millipore. ADAM10 antibody was purchased from Abcam. GluR1 antibody was purchased from Chemicon. Iba1 antibody was purchased from Wako Pure Chemical Industries. Alexa Fluor 594 F(ab)2 Fragment of Goat anti-rabbit IgG, Fluor 488 F(ab)2 Fragment of Goat anti-mouse IgG and Alexa Fluor 350 F(ab)2 Fragment of Goat anti-mouse IgG were purchased from Invitrogen. Antibodies against APP (369), PS1-NTF (Ab14) and Nicastrin (719) were developed in our laboratory [39 (link)]. The 3D5 antibody against BACE1 was kindly provided by Dr. Robert Vassar.
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3

Western Blot Analysis of APP Proteins

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Protein content was quantified by Bradford analysis prior to solubilization. 15 µg of protein plus LDS Sample buffer and 10% β-mercaptoethanol (Invitrogen NP0007) were separate by PAGE on a 4–12% Bis-Tris polyacrylamide gel (Biorad 3450125), transferred onto nitrocellulose using the Trans-blot Turbo system (Biorad) and visualized by red Ponceau staining. After membranes were blocked in 5%-milk (Biorad 1706404), the following primary antibodies were applied (overnight at 4°C, at 1:1000 dilution in blocking solution (Thermo 37573): Y188 (Abcam ab32136), 6E10 (BioLegend 803001), sAPPα (IBL 2B3), M3.2 (Biolegend 805701), sAPPβ (Covance Catalog# SIG-39138), sAPPβ-Sw (IBL 6A1), and GAPDH (Sigma G9545). After extensive washings in PBS/Tween20 0.05%, the following secondary antibodies were used diluted 1:1000 in 5%-milk: anti-mouse (Southern Biotech, 1031–05) and a 1:1 mix of anti-rabbit (Southern Biotech, 4050–05) and anti-rabbit (Cell Signaling, 7074). Secondary antibodies were incubated with membranes for 30 min, RT, with shaking). After extensive washings in PBS/Tween20 0.05%, blots were developed with West Dura ECL reagent (Thermo, PI34076), visualized with ChemiDoc MP Imaging System (Biorad) and signal intensities were quantified with Image Lab software (Biorad).
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4

Protein Purification and Immunodetection

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A23187, tunicamycin, thapsigargin, MG132, lactacystin, bafilomycin, NH4Cl, 3-methyladenine (3MA), and BAPTA were purchased from Sigma-Aldrich (St. Louis, MO, USA). The following antibodies were used for immunodetection: anti-22C11, Nicastrin (Millipore, Billerica, MA, USA), 6E10 (Signet, Dedham, MA, USA), sAPPβ (Covance, Princeton, NJ, USA), anti-Flag (Sigma), HA (Cell Signaling Technology, Seoul, Korea), USP25 (Santa Cruz, Dallas, TX, USA), HRD1 (Abgent, Seoul, Korea), Calnexin (Enzo, Farmingdale, NY, USA), LC3B (Novus, Littleton, CO, USA), GAPDH (Abcam, Seoul, Korea), β-actin and tubulin (Sigma-Aldrich).
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5

Quantifying APP Secretase Activity

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Cells were incubated with justicidin A for 8 h, and the media were concentrated using Amicon Ultra 30K centrifugal filters (Millipore). The concentrated media was immunoprecipitated with an APP antibody recognizing the N-terminus (abcam, MA, USA) and Protein G Agarose (Millipore). The immunoprecipitated samples were washed with PBS, and probed for sAPPα (Covance, NJ, USA) and sAPPβ (Covance) using Western blot.
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6

Antibody-Based Analysis of Synaptic Proteins

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The following antibodies were used: BACE1 (MAB5308; Chemicon); FLAG (clone M2; Sigma); sAPP-α (SIG-39139; Covance); sAPP-β (SIG-39138; Covance); PSD-95 (MABN68; Merck Millipore); Synapsin-1 (S193; Sigma); GluR1 (04-855; Merck Millipore); and synaptophysin (MAB5258; Merck Millipore). The α-secretase inhibitor GI254023X was from Sigma (SML0789). The β-secretase inhibitor IV was from Calbiochem (565788). The γ-secretase inhibitor DAPT was from Calbiochem (565770). TEV was from Invitrogen (10127-017).
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