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8 protocols using sp5 confocal imaging system

1

Measuring Intracellular Calcium Dynamics

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Cells were treated with BMP-2 for 48 hours in dye-free media supplemented with 10% FBS, centrifuged prior to resuspension in calcium-free modified Tyrode buffer (145 mM NaCl, 5.6 mM KCl, 100 μM EGTA, 1.0 mM MgCl2, 10 mM glucose, and 5.0 mM HEPES, pH 7.2), and incubated for an additional 15 minutes. Fluorescence was measured at room temperature via Leica SP5 confocal imaging system. Two-dimensional confocal images were taken at 1.5 second time intervals. Fluo-4 AM (Dojindo, Japan) was excited at wavelength 488 nm, and emission was detected at 515 nm. Changes in [Ca2+]i were expressed as R = F/F0, where R is resting fluorescence (F) divided by normalized fluorescence (F0).
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2

Imaging Sarcolemmal and Cytoskeletal Structures

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The surface sarcolemma including t-tubules of isolated myocytes were stained by incubating in di-8-ANEPPS at 5 μM for 5 min, then pelleted by centrifugation at approximately ×100 g and re-suspended in Tyrode’s solution. Cells were visualized on a Zeiss Pascal LSM5 laser scanning confocal microscope using a 1.4 NA 63× objective lens with the pinhole set to 1 Airy unit. Di-8-ANEPPS was excited at 488 nm and light collected at wavelengths greater than 505 nm.
Tissue slices were stained with Alexa-Fluor® 488-conjugated wheat-germ agglutinin (WGA) and Alexa-Fluor® 633-conjugated phalloidin. Microscope slides were allowed to warm to RT before adding 5 μg/ml WGA over the tissue sections. WGA was left for 1 h at RT before washing in PBS. Tissue was then stained with phalloidin at 5 U/ml for 1 h at RT before washing again and leaving to air dry. Slides were mounted with Vectashield® containing DAPI and sealed with nail polish. Tissue slices were visualized on a Leica SP5 confocal imaging system using a 1.4 NA 63× objective lens equipped with 405, 488 and 633 nm lasers with the confocal aperture set to 1 Airy unit. DAPI, Alexa-Fluor® 488 and 633 emissions were detected between 400–480, 500–550 and 650–700 nm, respectively.
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3

Immunostaining of Sural Nerve Tissue

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Sural nerve specimens were fixed overnight in 2% paraformaldehyde-lysine-periodate and then changed to phosphate buffer for storage. Frozen sections (10 μm) were immunostained following established protocols (Hsieh et al., 2008 (link)). Briefly, nonspecific binding was blocked by 0.1% Triton X-100 and 0.5% nonfat milk in Tris buffer, and nerve sections were incubated at 4°C overnight with primary antibodies suspended in 0.1% Triton X-100 and 0.5% nonfat milk in Tris buffer. After the sections were rinsed with Tris buffer, they were incubated with secondary antibodies at room temperature for 1 h. After a rinse in Tris buffer, 4′,6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich) was used for nuclear staining, if necessary. Fluorescent samples were viewed and scanned under a Leica SP5 confocal imaging system.
For fibrin quantification, the proportion of fibrin(+) blood vessels was derived according to the number of fibrin(+) blood vessels divided by the total number of blood vessels in that nerve tissue. For CD40 quantification, CD40(+) cells in the endoneurium of all nerve fascicles were counted and divided by the area of endoneurium and were expressed as cells/mm2.
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4

Immunohistochemistry and Histological Analysis of Mouse Liver

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Liver tissues were fixed in situ with 4% paraformaldehyde, incubated with 30% sucrose in PBS overnight, and embedded in OCT. Frozen sections were permeabilized with 0.3% Triton X-100 in PBS and then blocked in 5% BSA, followed by incubation in primary antibody solution overnight at 4 °C, and subsequently in secondary antibody solution at room temperature for one hour. Sections were mounted in VECTASHIELD Antifade Mounting Medium (Vector Laboratories, H-1000). Images were taken with Leica SP5 Confocal Imaging System and SP8 Lightning Confocal Microscope System.
For histology, formalin-fixed, paraffin-embedded mouse liver sections were stained with H&E to evaluate steatosis and inflammatory cell infiltration. Liver fibrosis was assessed by Picrosirius (sirius) red (Polysciences, catalog 24901) staining of the formalin-fixed, paraffin-embedded mouse liver sections.
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5

Immunofluorescence Imaging of Cell Cultures and Tissue Sections

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Cells cultured on glass coverslips or Ibidi 8-well μ-slides, cross-sections of aorta from VE-cadherin-CreER/RosatdTomato mice, or cross-sections of kidney from C57BL/6 J mice were washed twice with Hanks’ Balanced Salt Solution containing Ca2+ and Mg2+ (HBSS, Gibco), fixed with 3.7% formalin (Millipore) for 10 minutes and permeabilized with 0.5% Triton X-100 for 2 minutes (Sigma-Aldrich) in HBSS. Indicated antibodies were incubated in HBSS containing 1% bovine serum albumin and 1% fetal calf serum for 1 hour. Appropriate secondary antibodies labeled with Alexa fluorophores were obtained from Invitrogen and phalloidin-rhodamine was obtained from Sigma-Aldrich. Cells or sections were mounted with Prolong® gold antifade mountant with DAPI (Life technologies) and imaging was performed on an inverted Leica SP5 confocal imaging system.
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6

Visualizing MMc Frequencies in Pancreatic Tissue

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To confirm MMc frequencies, pancreatic tissue sections were screened using a Leica SP5 confocal imaging system at the Wolfson Bioimaging Facility, School of Biochemistry, University of Bristol, UK. Z-stack images of each tissue section were analyzed for FISH and immunofluorescence to allow visualization of X and Y chromosome signals in all planes of the nucleus.
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7

Immunohistochemical Analysis of Bladder Tissue

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Bladders were opened longitudinally, pinned on Sylgard plates and stretched. They were then fixed for 20–30 min in 4% neutral buffered formalin and washed in phosphate buffered saline (PBS) overnight on a shaker. Bladder sheets were cut into strips, washed and blocked with 1% horse serum in PBS+0.5% Triton X-100 (Sigma, UK) for 1 h at room temperature on a shaker. Tissues were incubated with primary antibody dilutions made up in PBS+0.5% Triton and 1% horse serum: Ano1 1∶250 (ProteinTech, Germany) or vimentin 1∶500 (Santa Cruz Biotechnology, Germany) overnight at 4°C. Negative controls omitted primary antibodies. Vascular smooth muscle present within bladder tissue was used as positive control [14] (link). Following several washes, tissues were incubated with 1∶750 dilutions of secondary antibodies: donkey anti-rabbit Alexa 488 for Ano1 and goat anti-mouse Alexa 594 for vimentin (Invitrogen, UK) and 2 µg/ml DAPI nuclear stain (Biotium, Germany) for 1 h at room temperature. Following several washes, whole tissues were mounted on slides with FluorSave (Calbiochem, UK). Slides were examined using a Leica SP5 confocal imaging system attached to Leica DMI 6000 inverted microscope.
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8

Fluorescence Microscopy Data Analysis

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Slides were examined and imaged with a Leica DM4000B upright fluorescent microscope (Wetzlar, Germany) or a Leica SP5 confocal imaging system. For multiple comparisons, a 1-way analysis of variance (ANOVA) followed by Tukey test was used. For single comparison, a 2-tailed unpaired Student's t-test was used.
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