The largest database of trusted experimental protocols

12 protocols using lambda phosphatase

1

Dephosphorylation of Labeled pS16M179

Check if the same lab product or an alternative is used in the 5 most similar protocols
Approximately 0.8 mg of lyophilized, 15N‐labeled pS16M179 was resuspended in 250 μl of water and allowed to sit at room temperature for 24 h. This solution was added to a 250 μl solution containing 50 mM TrisHCl, pH 8.5, while gently vortexing. Fifty μl of 10× Reaction Buffer (500 mM HEPES, 1 mM EGTA, 50 mM dithiothreiotol, 0.1% BRIJ 35), 50 μl of 10× MgCl2 (20 mM), and 5 μl of lambda phosphatase (400 units/uL, Santa Cruz Biotechnology, Dallas, TX) was added to this solution that had a final pH of 7.8. The reaction solution was incubated overnight at 303 K. Prior to purification by reverse phase chromatography as described above, an equal volume of reverse phase Buffer A was added to the solution and the pH adjusted to ~3 with 1 μl additions of TFA. A similar experiment was performed on a 0.5 mM sample of unlabeled pS16M179 in a Shigemi NMR tube (260 μl) under the same buffer conditions except the pH was adjusted to 7.1 prior to the addition of 5 μl of lambda phosphatase.
+ Open protocol
+ Expand
2

Phosphorylation of BRRF2 in EBV-infected cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293 cells latently infected with BRRF2-knockout EBV were transfected with pcDNABZLF1 together with expression vector for wild-type or mutant FLAG-tagged BRRF2. After one day, cells were lysed in phosphatase buffer (Santa Cruz). Lysed samples were reacted with or without Lambda phosphatase (Santa Cruz). Protein samples were separated on a 7.5% Phos-tag gel (Wako chemicals). After electrophoresis, the Phos-tag gel was washed with transfer buffer containing EDTA to remove zinc ions from the gel, according to the manufacturer’s instructions, followed by immunoblotting as specified above.
+ Open protocol
+ Expand
3

Investigating RhoA Phosphorylation in Gastric Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
AGS is a Lauren intestinal-type gastric adenocarcinoma cell line, and MKN-45 is a Lauren diffuse-type gastric adenocarcinoma cell line. AGS and MKN-45 cells were obtained from the America Type Culture Collection (ATCC). Cell lysates were collected in RIPA buffer (Sigma) containing Complete Protease Inhibitor Cocktail (Roche Diagnostics), and protein concentration was determined by the Bio-Rad Protein Assay. Anti-phosphorylated( Ser188)-RhoA antibody (Abcam ab125275, Cambridge, MA) was used to report phosphorylated RhoA (p-RhoA), and anti-RhoA (67B9) antibody (Cell Signaling #2117, Danvers, MA) was used to report total RhoA expression.
AGS and MKN-45 cell lysates were treated with lambda phosphatase (Santa Cruz Biotechnology sc-200312, Dallas, TX) to abolish immunoreactivity to phospho-dependent antibodies.
Silencing of RhoA was achieved via lentiviral transduction of human RhoA shRNA (sc-29471-V; Santa Cruz Biotechnology). A scramble shRNA control (SC-108080) was also used.
+ Open protocol
+ Expand
4

Immunostaining of Fixed and Permeabilized Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed with 4% PFA for 15 min at room temperature. Cells were permeabilized and blocked with 1% BSA, 0.2% Triton X-100 for 10 minutes at room temperature. Primary antibodies were diluted in 1% BSA and applied overnight at 4 °C. Secondary antibodies were diluted in 1% BSA and applied at room temperature for 1 hour. For Lambda Phosphatase treatment, after fixation and permeabilization, neurons were incubated with Lambda Phosphatase solution overnight at 4 °C. Lambda Phosphatase solution:1 X PMP buffer (New England Biolabs, Cat# B0716), 1 X Mn+ buffer (New England Biolabs, Cat# B1761S), 2.4:100 dilution of Lambda Phosphatase (Santa Cruz, sc-200312). Neurons were washed and antibodies applied as described above.
+ Open protocol
+ Expand
5

Phosphatase Treatment of Protein Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phosphatase treatment with lambda phosphatase (Santa Cruz sc-200312A) was performed according to the manufacturer’s instructions. WCEs were treated in 25 uL reaction volumes with 200 units at 30 °C for 1 h. Ovalbumin (Sigma A5503) (0.5 µg) was treated in 7.5 µL reaction volumes with 0–400 units at 30 °C for 1 h. After incubation, reactions were placed on ice and incubated to 85 °C with loading buffer.
+ Open protocol
+ Expand
6

Phosphatase and Lb^pro Treatments

Check if the same lab product or an alternative is used in the 5 most similar protocols
For phosphatase treatments, samples after cell fractionation were incubated with Calf Intestinal Phosphatase (NEB) for 30 min at 37°C or lambda phosphatase (Santa Cruz) for 30 min at 30°C according to manufacturer’s instructions. For Lbpro treatment, in vitro ubiquitination reaction or chromatin fraction was incubated with 100 μM Lbpro kindly provided by D. Komander (Swatek et al., 2019 (link)) in cleavage buffer (50 mM NaCl, 50 mM Tris pH 8, 10 mM DTT) for 30 min or 1 h at 37°C and analyzed by immunoblotting.
+ Open protocol
+ Expand
7

GSK3B Dephosphorylation and Phosphorylation by PLK2

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant GSK3B is known to be highly phosphorylated, therefore 400 ng of the purified recombinant human GSK3β (Abcam 43626) was pretreated with 16 units of lambda phosphatase (Santa Cruz) for 1 h at 30 °C [21 (link)]. The dephosphorylated GSK3B was then incubated with 10 μM ATP and 400 ng of purified recombinant human PLK2 protein (Abcam 102108) in 400 μl of kinase buffer (60 mM Hepes, pH 7.5, 3 mM MgCl2, 3 mM MnCl2, 1.2 mM DTT, 125 μg/ml PEG 20,000, 3 μM sodium orthovanadate, 1% phosphatase inhibitor cocktail (Calbiochem)) for 1 h at 30 °C. The kinase reaction was terminated by mixing with SDS sample buffer and heating for 5 min at 90 °C, and the samples were resolved by SDS-PAGE and immunoblotted.
+ Open protocol
+ Expand
8

Kinase Activity Assay with Phosphatase Treatment

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoprecipitated GST beads were prepared as mentioned above in the GST pulldown section. After 1 h, the beads were incubated with 1 μl CK2 enzyme and 1× CK2 reaction buffer (catalog no. P6010S; NEB Inc.) supplemented with 200 μM ATP and 30 mM MgCl2 and rotated for 1 h at 30°C. The beads were then incubated in the presence or absence of lambda phosphatase (catalog no. sc-200312A; Santa Cruz) as described in the manufacturer’s protocol. Following this, the beads were washed and analyzed by immunoblotting.
+ Open protocol
+ Expand
9

Prostate TMA Immunohistochemistry: Phosphorylated mTOR Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
The prostate TMAs were previously described [21 (link)]. Tissues were stained for the expression of phosphorylated mTOR, S6R and 4EBP1 using a standardized protocol on the Ventana Benchmark® Ultra system automatic monostainer (Ventana Medical Systems). Details are provided in Supplementary Table S2. The percentage of tumor cells with positive staining was scored. Tissues scored for at least two cores were analysed, and the highest score was used for statistical analysis. The cut off for low and high p-mTOR expression is based on the median (Figure 1B). The ERG immunohistochemistry results on this cohort were previously reported [21 (link)].
For phosphatase treatment, tissue was incubated with 24000 units Lambda Phosphatase (sc-200312, Santa Cruz Biotechnologies) in 1× incubation buffer (supplied by Santa Cruz) for 2 hours at 37°C before applying the primary antibody. As control, a slide was incubated with only the incubation buffer without the Lambda Phosphatase.
+ Open protocol
+ Expand
10

Dephosphorylation of Brain Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brains were dissected from the heads of 5 worker pupae under binocular microscopy and homogenized in 150 µl buffered insect saline [20 mM Tris-HCl (pH 7.4), 130 mM NaCl, 5 mM KCl, 1 mM CaCl2, containing protease inhibitor cocktail (Roche)]. 2 ul (800 Unit) of Lambda Phosphatase (Santa Cruz Biotechnology, USA), 10 µl of 10x Lambda Phosphatase buffer and 10 µl of 10x MnCl2 solution (Santa Cruz Biotechnology) were added to the 65 µl homogenate and total volume was made up to 100 µl with water. The sample was incubated at room temperature for 30 min. As a negative control, in which dephosphorylation was inhibited, 10 µl of 10x PhosSTOP (Roche) was added instead of Lambda Phosphatase. After the incubation, the samples were used for immunoblotting.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!