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Xbridge amide column

Manufactured by Waters Corporation
Sourced in United States

The Xbridge amide column is a chromatography column designed for the separation and analysis of a wide range of polar and hydrophilic analytes. The column features a stationary phase with a proprietary amide-based chemistry that provides excellent selectivity and retention for these types of compounds.

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80 protocols using xbridge amide column

1

Mitochondrial Metabolomics Analysis Pipeline

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The procedure used for mitochondria metabolomics analysis is described elsewhere31 (link). Mitochondrial lysates were precipitated with acetonitrile containing internal standards; the supernatant was separated by centrifugation, and then analyzed by tandem mass spectrometry (TSQ Vantage, Thermo Fisher Scientific). Chromatographic separation was performed on a XBridgeTM Amide column (2.1 × 150 mm, 5 μm; Waters) with a XBridgeTM Amide guard column (2.1 × 10 mm, 5 μm; Waters). The mobile phase was composed of 10 mM ammonium acetate in water (phase A) and acetonitrile (phase B). L-carnitine, acylcarnitines and their internal standards (Sigma–Aldrich) were analyzed in positive ion multiple reaction monitoring (MRM) mode. The raw data files were processed using LCquan 2.7 software (Thermofisher Scientific) to generate chromatographic peak areas of each analyst and their response ratios to internal standards. Then the concentration of C0 and acylcarnitines were calculated from the response ratios and the concentration of their internal standards using isotope dilution method.
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2

Quantifying Soluble Sugars in Hevea Leaves

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The high-performance liquid chromatography (HPLC)-evaporative light scattering detection (ELSD) method was used to determine soluble sugars in Hevea leaves and phloem exudate. HPLC analysis was performed on a Waters e2695 separations module (Waters, Milford, MA, United States) equipped with an Alltech 3300 ESLD detector (Alltech, Deerfield, IL, United States). Separation was achieved on a XBridgeTM Amide column [4.6 mm × 250 mm i.d., 3.5 μm particle size (Waters, Milford, MA, United States)]. All samples and standards were filtered through 0.45 μm Millipore filters before loading samples of 10 μL onto the machine. The HPLC-ELSD conditions were optimized following Ma et al. (2014) (link) with a solvent ratio of 85 acetonitrile:15 water (v/v), a flow rate of 1 mL/min, the column and drift tube temperatures set at 45 and 82°C, respectively, and the nebulizer gas flow rate set at 2 L/min. Peaks were quantified using calibration standards of HPLC grade sugars, viz. glucose, fructose, sucrose, raffinose, and stachyose (Sigma–Aldrich, Shanghai, China), and sorbitol and quebrachitol (Shanghai Yuan ye Bio-Technology Co., Ltd., Shanghai, China).
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3

Quantification of Plasma TMAO Levels

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The plasma TMAO concentrations were quantified using liquid chromatography-mass spectrometry that employed a Q Exactive instrument (Thermo Scientific, San Jose, CA) equipped with a Dionex Ultimate 3000 UHPLC system (Thermo Scientific), and separation was carried out at 30 °C in an Xbridge amide column (4.6 × 150 mm, 3.5 mm, Waters, Milford, MA). The mobile phase consisted of a combination of 5% acetonitrile containing 5 mM ammonium acetate in MilliQ water (solution A) and 5 mM ammonium acetate in acetonitrile (solution B). The chromatogram was run under isocratic conditions at a flow rate of 0.7 mL/min, as follows: A/B = 95/5. A heated electrospray ionization (HESI) ion source was used for the ionization. The HESI parameters were optimized as follows: sheath gas flow rate 53 units, auxiliary gas unit flow rate 14, capillary temperature 269 °C, auxiliary gas heater temperature 45 °C, spray voltage 2500 V, and S lens RF level 55.
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4

Urine Metabolite Extraction and Profiling

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The extraction and metabolomic profiling of urine endogenous metabolites were performed as described before with minor modifications for the column length (Yuan et al., 2012 (link)). Method details were described in the supplemental materials. Briefly, metabolites in urine were extract with four volumes of prechilled (−20 °C) extraction buffer containing methanol and acetonitrile (50:50, v/v). Metabolomic analysis of 462 metabolites from 63 metabolic pathways was performed by LC-MS/MS. Chromatographic separation was conducted on a 100 mm × 4.6 mm, 3.5 µm XBridge amide column (Waters, USA) held at 25 °C. A total of 330 of the 462 targeted metabolites were measurable in all urine samples. Metabolomic data were normalized using urinary creatinine concentration for comparative analysis (Khamis et al., 2018 (link)). The quality control and analytical performance were described in the supplemental materials.
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5

HILIC-Based LC-MS/MS Analysis of Sialic Acids

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LC–MS/MS analyses were performed on an LC-20 AC HPLC system (Shimadzu, Kyoto, Japan) coupled with a Sciex API 4000 Q Trap mass spectrometer (AB Sciex, Foster City, CA, USA). HILIC chromatography was established on an XBridge Amide column (3.5 μm, 100 × 2.1 mm; Waters Co., Milford, MA, USA) for ManNAc (method 1), and on an Atlantis HILIC Silica column (5 μm, 50 × 3.0 mm; Waters Co., Milford, MA, USA) for Neu5Ac (method 2) and CMP-Neu5Ac (method 3). The HPLC columns were kept at ambient temperature.
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6

LC-MS Analysis and Purification of Sugars

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LC-MS measurements were done as described in [18 (link)] with 10 μl injection volumes. In short, an HPLC (1200 Infinity, Agilent, Santa Clara, CA, USA) equipped with XBridge Amide Column (3.5 μm particle size, 2.1 × 150 mm, Waters, Milford, MA, USA) was used. Buffers were A) 70/30 Milli-Q H2O/Acetonitrile supplemented with 0.1% NH4OH and B) 80/20 Acetonitrile/Milli-Q H2O supplemented with 0.1% NH4OH. The gradient used was 0% to 60% buffer A in 15 min, then 60% to 0% buffer A in 3 min. The sugars were detected using Q-TOF MS (6530, Agilent, Santa Clara, CA, USA) in the negative ion mode. Lactose, 2’-FL and 3-FL were used as standards in concentrations between 1 ppm to 100 ppm. This LC setup was also used to purify the sugar for NMR studies, with the following modifications: The gradient was 0% to 60% buffer A in 10 min, then 60% to 0% buffer A in 1 min and equilibration of 4 min between injections. Injections of 35 μl containing approximately 3000 ppm of the product were used and the fucosyllactose fraction (time 8 min to 10 min) was collected prior to the MS-detector.
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7

HPLC-MS Metabolite Separation and Detection

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The HPLC (Ultimate
3000 UHPLC) is coupled to QE-MS (Thermo Scientific) for metabolite
separation and detection. An Xbridge amide column (100 × 2.1
mm i.d., 3.5 μm; Waters) is employed for compound separation
at room temperature. The mobile phase A is 20 mM ammonium acetate
and 15 mM ammonium hydroxide in water with 3% acetonitrile, pH 9.0,
and mobile phase B is acetonitrile. The linear gradient used is as
follows: 0 min, 85% B; 1.5 min, 85% B, 5.5 min, 35% B; 10 min, 35%
B, 10.5 min, 35% B, 14.5 min, 35% B, 15 min, 85% B, and 20 min, 85%
B. The flow rate was 0.15 mL/min from 0 to 10 min and 15 to 20 min
and 0.3 mL/min from 10.5 to 14.5 min.
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8

HPLC Fractionation of Natural Glycolipids

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NGLs were fractionated by normal phase HPLC with a XBridge Amide column (3.5 μm, 4.6 × 250 mm, Waters, Borehamwood, UK) using a Gilson system coupled with a fluorescence detector (λex at 255 nm and λem at 405 nm) (22 (link)). The gradient was CHCl3/MeOH/H2O 130:70:9 (solvent A) to 10:20:8 (solvent B) in 60 min at a flow rate of 0.5 ml/min.
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9

Analytical Profiling of Flavonol Glycosides

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Culture samples were primarily analyzed by TLC on Silica gel 60 F254 precoated plates (Merck, Germany). All plates were run in a closed TLC chamber and developed using standard visualization techniques and agents: UV fluorescence (254 nm) or by staining with 10 % (v/v) H2SO4 and subsequent charring. The mobile phase for detecting the various flavonols and corresponding glycosides consisted of an ethyl acetate:acetic acid:formic acid:water (100:11:11:27 v/v) mixture [63 (link)]. Product spot intensities of other flavonol glycosides were processed and quantified using ImageJ [64 ]. HPLC quantification of sucrose, fructose and glucose was performed using an X-bridge Amide column (35 μm, Waters, USA) as described previously [45 ]. Quercetin, hyperoside, quercitrin and isoquercitrin were detected with the method described by Pandey et al. [41 (link)] using a Varian HPLC system (Agilent technologies, California). Mass spectrometry for determination of the various flavonol glycosides was performed with a Micromass Quattro LC (McKinley Scientific, USA). Detection was performed in negative mode ESI-224 MS with a capillary voltage of 2.53 kV, a cone voltage of 20 V, cone and desolvation gas flows of 93 and 420 L/h, and source and cone temperatures of 150 and 350 °C, respectively.
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10

UHPLC-QE-MS Metabolite Separation and Detection

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Ultimate 3000 UHPLC (Dionex) was coupled to Q Exactive-Mass spectrometer (QE-MS, Thermo Scientific) for metabolite separation and detection. For additional polar metabolite analysis, a hydrophilic interaction chromatography method (HILIC) with an Xbridge amide column (100 × 2.1 mm i.d., 3.5 μm; Waters) was used for compound separation at room temperature. The mobile phase and gradient information was described previously 37 (link).
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