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4 protocols using sh con

1

Modulating HAGLROS expression via siRNAs

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Small interfering RNAs (siRNAs) against HAGLROS (siRNA-1, siRNA-2 and siRNA-3), control non-targeting siRNA (si-con) and KPNA2-overexpression vector (KPNA2) were designed by GenePharma (Shanghai, China). MiR-26b-5p mimic or inhibitor (miR-26b-5p or inh-miR-26b-5p) and their control nonsense sequences (miR-NC/inh-NC) were obtained from Vigene Biosciences (Shandong, China). The lentivirus harboring the short hairpin RNA sequences against HAGLROS (sh-HAGLROS) and negative control (sh-con) was provided by RiboBio (Guangzhou, China). Transfection was performed by using Lipofectamine 3000 reagent (Invitrogen, Carlsbad, CA, USA).
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2

Manipulating SBF2-AS1 and ADAM17 in Lung Cancer

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The pcDNA3.1 vector carrying SBF2-AS1 (SBF2-AS1), pcDNA3.1 vector carrying ADAM17 (ADAM17) or empty vector (vector) were obtained from RiboBio (Guangzhou, Guangdong, China). MiR-338-3p mimics, miRNA negative control (miR-NC), miR-338-3p inhibitor, miR-NC inhibitor, small interfering RNA (siRNA) targeting SBF2-AS1 or ADAM17 (si-SBF2-AS1, si-ADAM17) and scramble control siRNA (si-Con) were purchased from RiboBio. 2×104 A549 or H1975 cells were transfected with 100 μmol/L miRNAs, or 5 μg pcDNA3.1, or 50 nM siRNA using 7.5 μl of Lipofectamine 3000 (Thermo Fisher Scientific) in 125 μl of Opti-MEMTM medium combination with 5 μl of p3000 for twenty-four hours. For functional assay in vivo, sh-SBF2-AS1 and sh-Con were purchased from RiboBio and constructed into A549 cell. The cDNA sequences of SBF2-AS1 were constructed by Shanghai Jima Pharmaceutical Technology Co., Ltd., (Shanghai, China) and were subcloned into pLKO.1 lentivirus vector (Addgene). pLKO.1 empty vector was used as negative control plasmid. Then, lentivirus plasmid was transfected into HEK-293T cell along with lentivirus packaging plasmids (psPAX2 and pMD2.G, Addgene). 72 hours after transfection, cell supernatants were collected and A549 cell was infected with lentivirus, followed by the screening of 1.5 μg/ml puromycin (Sigma). After 7 days, stable lentivirus transfected A549 cell lines were obtained.
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3

circSEPT9 and SLC1A5 Knockdown Protocols

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The small hairpin RNAs against circSEPT9 (sh-circSEPT9, 5ʹ-GCCAGGAGGCCTTGAAAAGAT-3ʹ) and SLC1A5 (sh-SLC1A5, 5ʹ-TCAGCAGCCTTTCGCTCATACTCTA-3ʹ), miR-149-5p mimic (5ʹ-UCUGGCUCCGUGUCUUCACUCCC-3ʹ), miR-149-5p inhibitor (5ʹ-GGGAGUGAAGACACGGAGCCAGA-3ʹ) and respective controls (sh-NC, sh-con, mimic NC and anti-miR-NC) were synthesized by Ribobio Co., Ltd. (Guangzhou, China). pcDNA 3.1 vector (pcDNA-NC) and full-length SLC1A5 were used to generate SLC1A5 overexpression plasmid (pcDNA-SLC1A5). Cell transfection was executed using FuGENE6 (Roche) following the user’s manual.
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4

TNFAIP3 Knockdown and Overexpression in A549 and H1299 Cells

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The sequence of TNFAIP3 was obtained from the Pubmed website. The lentiviral shTNFAIP3 and the corresponding negative control (shCon) were designed and purchased from Ribobio (Guangzhou, China).
The sequences of shTNFAIP3 are as follows: shTNFAIP3-1, 5'-TGTAACTCTTTGGGTTATTAC-3'; shTNFAIP3-2, 5'-TTGGAATCAGGTTCCAATTTC-3'. The shRNA was cloned into pLKO vector, cotransfected to HEK293T cell line with lentiviral helper plasmids pVSVG, pREV and pGAG system. The supernatants containing virus was collected, ltered and used for transfection of A549 and H1299 cells with polybrene. For overexpression of TNFAIP3, full length TNFAIP3 cDNA was cloned into pCMV 4.0 vector. Transfection was conducted with Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) according to manufacturer's instruction.
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