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16 protocols using pkh67 kit

1

Visualizing EV Internalization in Cancer Cells

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The EVs isolated from M2 macrophages were labeled with PKH67 kit (KH67GL, Sigma-Aldrich). AGS and MKN-45 cells were cultured in the dish overnight, and then added with 10 μg PHK67-labeled EVs for 24 h of co-culture. The co-culture system was then soaked in 4% paraformaldehyde for 0.5 h, rinsed thrice with PBS, and permeabilized with 2% Triton X-100 for 15 min. Next, cells were blocked with 2% bovine serum albumin (BSA) for 45 min after three PBS washes. Thereafter, the cells were stained using DAPI (2 μg/mL) and mounted. Finally, fluorescence expression was detected using a fluorescence microscope.
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2

Exosome Isolation from Cell Lines

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Exosomes were isolated from HCT-15 and HCT-15/FU cells conditioned medium by differential centrifugation. CM was centrifuged at 2 500 ×g and 8 500 ×g for 30 min each time. Then, the supernatant was centrifuged at 120 000 ×g for 70 min three times. Exosomes were further centrifuged at 110 000 ×g for 70 min (all steps were performed at 4 °C) and re-suspended in PBS. The concentration of exosomes was determined using the BCA method (ThermoScientific, USA). Exosomes were labelled as recommended by the manufacturer (PKH67 kit, Sigma Aldrich).
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3

Macrophage Signaling Pathway Reagents

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EUK-134, DPI, LY294002, calphostin C, 5-(N-Ethyl-N-isopropyl)amiloride (EIPA), cytochalasin D, FITC-dextran, DCFH-DA, PKH67 kit and thioglycollate medium were purchased from Sigma-Aldrich (St. Louis, MO, USA). M-CSF was purchased from Miltenyi Biotec Inc. (San Diego, CA, USA). The antibody array kit was obtained from RayBiotech. Phospho-PKCδ (Tyr-311), phospho-ERK (Tyr 204), β–tubulin and total ERK antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). Phospho-p47phox was obtained from Sigma-Aldrich (St. Louis, MO, USA). Nox2 antibody was obtained from Abcam. Total PKCδ, NOS2, arginase 1 and anti-β-actin antibodies were procured from Santa Cruz Biotechnology (Dallas, TX, USA).
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4

EV Labeling and Cellular Uptake Assay

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Labeling of EVs was carried out according to the PKH67 kit (Sigma-Aldrich, St. Louis, MO, USA) instructions. In brief, 100 μL EV resuspension or PBS were added to 1 mL of Dilution C, respectively, followed by 4 μL PKH67 incubation for 4 min. Subsequently, the sample was closed with 2 times the volume of 0.5% BSA and leveled with PBS, then centrifuged at 120,000× g for 2 h at 4 °C. The precipitate was PKH67-labeled EVs.
Cells were fixed with 4% paraformaldehyde (Shyuanye, Shanghai, China) after coincubation with PKH67-labeled EVs or PBS with PTr2 cells for 48 h; the PTr2 cells were stained with TRITC Phalloidin (YEASEN, Shanghai, China) followed by DAPI staining according to the instructions. Subsequently, photographs were taken after 48 h of co-incubation using confocal microscopy (LSM 800, Zeiss, Oberkochen, Germany).
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5

Labeling Exosomes with PKH67 Dye

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The purified MSC-Exo cells were labeled using a PKH67 kit (Sigma-Aldrich) according to the procedure reported by Bang et al. [15 (link)]. Briefly, exosomes diluted in PBS were added to 0.5 mL of Diluent C. At the same time, 4 mL of the PKH26/PKH67 dyes were added to 0.5 mL of Diluent C and incubated for 4 min at room temperature with the exosome solution. To bind excess dye, 2mL of 0.5% BSA/PBS was added. The labeled exosomes were washed at 100,000× g for 1 h, and the exosome pellet was resuspended with PBS and used for uptake experiments.
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6

Labeling and Characterizing Extracellular Vesicles

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PKH67 Kit (Sigma-Aldrich, cat. PKH67GL, St. Louis, MI, USA) was used for the labeling of EVs. 100uL EVs were mixed with 0.4uL PKH67 reagent at room temperature, 200uL EVs-free FBS was used to stop the staining, the labeled EVs were obtained by centrifugation (120 000xg, 70min, 4°C) and resuspended in 100uL PBS. The concentration and size distribution of EVs were measured by Nano-particle analysis (ZetaView, PMX 110, Germany), Western blot assay was used for characterization of EVs related protein biomarkers. The microstructure of EVs was observed by a transmission electron microscope (Hitachi, Tokyo, Japan) using 1% (v/v) urayl acetate staining.
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7

Exosome-Loaded Hydrogel Enhances HUVEC Imaging

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Exosomes were labeled with the PKH67 kit according to the manufacturer’s instructions (Sigma, USA) and stored at 4°C for later use. The prepared 24% PF-127 hydrogel was mixed with labeled exosomes in an ice bath until the precipitate had completely dissolved, and the resulting mixture was stored at 4°C. HUVECs seeded in 12-well plates were divided into four groups: 1) hUCMSC-exos/PF-127 group: 1 mL hUCMSC-exos/PF-127; 2) hUCMSC-exos group: 1 mL hUCMSC-exos; 3) PF-127 hydrogel group: 1 mL 24% PF-127; and 4) Control group: 1 mL PBS. Cells were incubated in an incubator with 5% CO2 in the dark for 12 h. A 1:1000 DAPI nuclear staining solution was prepared with PBS. The cells were placed on ice, washed three times with PBS and then incubated in the dark for 30 min with the diluted DAPI stain. Four different fields of view in each group were randomly imaged with a light microscope (Leica®, Germany), and statistical analysis was conducted.
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8

Fluorescent Labeling of Extracellular Vesicles

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1 × 106 MC3T3-E1 cells were plated in a six-well plate for culturing and 100 μL of FBS EXO or FBS EXO-ICA were added. 100 μL of the A and B solutions in the PKH67 kit (Sigma, United States) were prepared at a ratio of 1:4000, mix 200 μL, and incubated for 15 min at room temperature in the dark. 200 μL of 1% BSA were added to the above solution, which was centrifuged at 100,000 × g for 2 h. The concentration was measured, and the solution was added to the cells at a concentration of 20 μg per well, and cultured for 24 h. The cells were fixed with 4% paraformaldehyde for 20 min, and blocking solution was added for 20 min. Phalloidin (1: 200) was incubated in a wet box at 4°C overnight. Then the cells were stained with DAPI for 8 min prior to observation with an inverted fluorescence microscope.
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9

Isolation and Characterization of Stem Cell-Derived Extracellular Vesicles

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EVs were purified from the cell culture supernatant of SKP-SCs that were cultured in differentiation medium. After the cell density reached 80% confluence, medium was switched to serum-free medium for 48 h. The supernatant, namely conditioned medium, was collected and went through sequential ultracentrifugation at 500g for 10 min to remove the cell debris, followed by filtering through a 0.22-μm filter (Millipore). EVs were isolated using the exoEasy Kit (QIAGEN) from 15 ml cell culture supernatant; the detail experiment steps were following the manufacturer’s protocol.
The morphology of the EVs was observed under transmission electron microscope (TEM, Hitachi), and nanoparticle tracking analysis (NTA, German particle Metrix) was utilized to measure EV diameter and particle number. The protein concentration was measured using Bicinchoninic Acid (BCA) protein assay (Thermo Scientific), and exosomal markers CD9, CD63, and CD81 as well as tumor susceptibility gene 101 (TSG101) were detected by Western blot analysis.
Fluorescence labeling of EVs was performed according to the protocol previously described [24 (link)]. The PKH67 kit (Sigma) was used according to the instruction manual. The labeled EVs were concentrated by an Amicon Ultra 10 kDa tube (Millipore), and the EV uptake experiment was performed.
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10

Exosome Isolation and Characterization from Macrophages

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The exosomes secreted by macrophages were isolated using gradient centrifugation [29 (link)]. Briefly, macrophages were cultured for 48 hours in exosome-free medium. Then, the macrophage culture medium was collected and centrifuged at 1000 × g for 10 min, 3000 × g for 30 min, 6000 × g for 40 min, and 12,000 × g for 2 hours to remove the cell debris. The supernatant was collected and centrifuged at 100,000 × g for 4 h at 4°C to collect the exosomes in the pellet. The size and concentration of the exosomes were determined using transmission electron microscopy and a nanoparticle tracking analyzer. Evaluate the purity of exosomes by detecting the expression levels of exosome markers such as CD81, TSG101, CD9, and calnexin using western blotting. The exosomes were labeled with a PKH67 kit (Sigma, St. Louis, MO, USA) to detect the phagocytosis of exosomes by tumor cells.
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