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Adenosine 5 monophosphate disodium salt

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Adenosine 5'-monophosphate disodium salt is a laboratory reagent used in various biochemical and molecular biology applications. It is the disodium salt form of adenosine 5'-monophosphate, a nucleotide that plays a crucial role in cellular energy metabolism and signaling pathways.

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8 protocols using adenosine 5 monophosphate disodium salt

1

Standard Analytical Reagents for Sample Analysis

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Analytical-grade standards for the chemical analysis of samples, such as 0.1 N silver nitrate standard solution (Pine Chemical™, Nonthaburi, Thailand), potassium chloride (Daejung™, Gyeonggi-do, Republic of Korea), and potassium chromate (KemAus™, Cherrybrook, NSW, Australia), were purchased from local vendors. Cytidine 5′-monophosphate disodium salt (5′-CMP, ≥99%; AR grade), uridine 5′-monophosphate disodium salt (5′-UMP, ≥99%; AR grade), and L-glutamic acid monosodium salt were purchased from Alfa Aesar™ (Heysham, UK). Guanosine 5′-monophosphate disodium salt hydrate (5′-GMP, ≥97%; AR grade), methanol (HPLC grade), and ultrapure water (HPLC grade) were purchased from Fisher Scientific™ (Loughborough, UK). Orthophosphoric acid (HPLC grade) was purchased from Loba Chemie™ (Tarapur, India). Inosine 5′-monophosphate disodium salt hydrate (5′-IMP, ≥99.0%; HPLC grade) and adenosine 5′-monophosphate disodium salt (5′-AMP, ≥99.0%; HPLC grade) were purchased from Sigma–Aldrich Co., Ltd. (Singapore).
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2

Microfluidic Fabrication Protocols Using Silicon Wafers

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Silicon (100) (Si) wafers were purchased from University Wafers (Boston, MA). Poly (methylmethacrylate), PMMA, substrates and cover plates were purchased from Good Fellow (Berwyn, PA) and cyclic olefin copolymer (COC 8007 and 6017) was purchased from TOPAS Advanced Polymers (Florence, KY). An anti-adhesion monolayer of (Tridecafluoro-1,1,2,2-tetrahydrooctyl) Tricholorosilane (T-Silane) was purchased from Gelest, Inc. (Morrisville, PA). Tripropylene glycol diacrylate (TPGA), trimethylolpropane triacrylate (TMPA), Irgacure 651 (photo-initiator), 1-ethyl-3-[dimethylaminopropyl] carbodimide hydrochloride (EDC), thymidine 5′-monophophate disodium salt, 5-methylcytosine monophosphate disodium salt, cytidine 5′-monophosphate disodium salt, adeno­sine 5′- monophosphate disodium salt and guanosine 5′-mono-phosphate disodium salt, triethylammonium acetate (TEAA), cetyltrimethylammonium bromide (CTAB), (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid, 2-amino-2-methyl-1-propanol (AMP), and methanol (MeOH) were purchased from Sigma-Aldrich (St. Louis, MO). Tris-borate buffer and sodium hydroxide (NaOH) was obtained from Fisher Scientific (Houston, TX). ATTO 532 dye was purchased from Atto-Tec (Siegen, Germany). All required dilutions were performed using 18 MΩ/cm MilliQ water (Millipore technologies) and all measurements were performed at 25 °C unless specified otherwise.
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3

Statin Compounds Characterization Protocol

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Atorvastatin sodium salt (>98%), pravastatin sodium salt (≥98%), fluvastatin sodium salt hydrate (≥98%) and simvastatin (≥98%) were purchased from Cayman Chemical (Ann Arbor, MI, USA). Rosuvastatin sodium salt (98%) was synthesized by Synthex Technologies Sp. z o. o. according to previously reported procedure [40 (link)]. Potassium phosphate dibasic (K2HPO4) (≥98%) and potassium phosphate monobasic (KH2PO4) (≥98%) were purchased from J.T. Baker (New Jersey, NY, USA). Disodium edetate dihydrate (EDTA) (>98.5%), 4-(2-Hydroxyethyl)piperazin-1-ylethanesulfonic acid (HEPES) (99%), ethanol (99.8%), perchloric acid (HClO4) (70%), magnesium chloride hexahydrate (MgCl2 × 6H2O) (99%) and potassium hydroxide (KOH) were purchased from Avantor Performance Materials (Gliwice, Poland). Adenosine 5′-monophosphate disodium salt (AMP) (≥99.9%), adenosine 5′-diphosphate sodium salt (ADP) (≥95%), adenosine 5′-triphosphate disodium salt hydrate (ATP) (99%), tetrabutylammonium hydrogensulfate (TBA) (97%), methanol (≥99.9%), isopropyl thiogalactopyranoside (IPTG), bacterial cell culture reagents and supplements for adenylate kinases production, BL21-CodonPlus (DE3)-RIL strain and pET-3a(+) expression vector were purchased from Sigma-Aldrich (Poznań, Poland).
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4

Quantifying Cellular Metabolism via LC-MS

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For cell-based 13C6 metabolite labeling analysis, around 90% confluent H1299 cells were washed by glucose-free culture medium (Gibco, 11966-025) and cultured in medium containing 13C6-glucose (10 mM) (Cambridge Isotope Laboratories, CLM-1396) for 30 min. High-resolution LC–MS/MS was used for analyzing the levels of 13C6-labeled intracellular metabolites11 (link).
For label-free xenograft metabolite analysis, the xenograft tissue samples were homogenized in 150 μl of extraction solution (half methanol and half water) with 250 ng ml−1 4-nitrobenzoic acid and debrisoquine as internal standard for negative and positive modes, respectively, followed by adding 150 μl of acetonitrile. After incubation for 30 min at −20 °C, the samples were centrifuged at a speed of 16,000g for 30 min at 4 °C. The standards—namely inosine 5′-monophosphate disodium salt (IMP, I4625), adenosine 5′-monophosphate disodium salt (AMP, 01930), guanosine 5′-monophosphate disodium salt (GMP, G8377), uridine 5′-monophosphate disodium salt (UMP, U6375) and cytidine 5′-monophosphate disodium salt (CMP, C1131)—were obtained from Sigma-Aldrich. The samples were transferred to MS vials for LC–MS analysis by QTRAP 7500 System (SCIEX). Data were acquired and normalized to the internal standards and then analyzed with SCIEX OS software.
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5

Fabrication of Microfluidic Devices

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Silicon (Si) 〈100〉wafers were purchased from University Wafers (Boston, MA). Non-impact modified PMMA was received from ePlastics (San Diego, CA). Cyclic olefin copolymer (COC 8007 and COC 5010) were purchased from TOPAS Advanced Polymers (Florence, KY). COC 6015 was obtained from Knightsbridge Plastics Inc. (Fremont, CA). UV curable polyurethane resin was purchased from Chansang Co. ATTO-532 was secured from Atto-Tec (Siegen, Germany). Uridine 5’-monophophate disodium salt, cytidine 5’-monophosphate disodium salt, adenosine 5’-monophosphate disodium salt, and guanosine 5’-monophosphate disodium salt were all obtained from Sigma-Aldrich (St. Louis, MO). Molecular biology grade water was secured from Thermo Fisher (Waltham, MA).
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6

Synthesis of Kyoto Green Fluorescent Dye

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Kyoto Green was synthesized following the procedure described in Ojida et al.23 (link). Magnesium chloride (MgCl2), zinc nitrate (Zn(NO3)2), HEPES minimum 99.5% titration (C8H18N2O4S), p-nitrophynyl thymidine 5′-monophosphate (pNph-5′-TMP), sodium pyrophosphate decahydrate (NaPPi), adenosine 5′-triphosphate disodium salt (ATP), and adenosine 5′-monophosphate disodium salt (AMP) were products of Sigma-Aldrich (St. Louis, MO, USA) or Merck (Darmstadt, Germany). Cordycepin, uridine, cytidine, inosine, thymidine, kaempferol, 2′-deoxyadenosine, 2′-deoxyinosine, 2′-deoxyuridine, and 2′-deoxyguanosine were purchased from Fujifilm Wako Pure Chemical Corporation (Japan). Myricetin, quercetin dihydrate and guanosine were commercially available from Alfa Aesar (UK). Recombinant human ENPP1 was purchased from R&D systems (Minneapolis, USA).
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7

Amino Acid and Nucleotide Standard Preparation

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Amino acid standard mix containing alanine (Ala), glycine (Gly), valine (Val), leucine (Leu), isoleucine (Ile), threonine (Thr), serine (Ser), proline (Pro), aspartic acid (Asp), methionine (Met), 4-hydroxyproline (Hyp), glutamic acid (Glu), phenylalanine (Phe), lysine (Lys), histidine (His), tyrosine (Tyr), tryptophan (Trp), and cystine (C–C) was purchased from Phenomenex, Torrance, USA. Solvents used were HPLC grade and purchased from Sigma-Aldrich, Copenhagen, Denmark.
5′-mononucleotide standards including adenosine 5′-monophosphate disodium salt (AMP, ≥ 99.0%), guanosine 5′- monophosphate disodium salt hydrate (GMP, ≥ 99%), and inosine 5′-monophosphate disodium salt hydrate (IMP, ≥ 99.0%) were obtained from Sigma-Aldrich, Copenhagen, Denmark. Xanthosine 5′-monophosphate disodium salt (XMP, ≥ 98%) and uridine 5′-monophosphate disodium salt (UMP, ≥ 99%) were obtained from Carbosynth, Compton, UK.
Ultrapure Milli-Q water (Milli-Q system, Millipore, Bedford, MA, USA) was used throughout the study.
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8

Nucleotide and Polymer Preparation

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Polyethylene glycol 8000 (Lot 091M01372 V), Mw = 8000, adenine, adenosine, adenosine 5 -monophosphate disodium salt (AMP), adenosine 5 -diphosphate sodium salt (ADP), adenosine triphosphate sodium salt (ATP), guanosine, guanosine 5 -monophosphate disodium salt (GMP), guanosine 5 -diphosphate sodium salt (GDP), guanosine 5 -triphosphate sodium salt (GTP) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dextran-75 (Lot 119945) with an average molecular weight (M w ) 75,000 by light scattering were purchased from USB Corporation (Cleveland, OH, USA).
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