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Optilab t rex ri detector

Manufactured by Wyatt Technology
Sourced in United States

The Optilab T-rEX RI detector is a refractive index (RI) detector designed for use in liquid chromatography (LC) and gel permeation chromatography (GPC) applications. It measures the change in refractive index of the mobile phase as it passes through the detector cell, providing a signal that is proportional to the concentration of the analyte.

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13 protocols using optilab t rex ri detector

1

SEC-MALS Analysis of Ska Complex

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SEC-MALS was performed on a Dawn Heleos II System with an Optilab T-rEX RI detector (Wyatt) and a 1260 Inifinity II LC system (Agilent). The Superose 6 increase 10/300 column (GE Healthcare) was pre-equilibrated with running buffer (50 mM HEPES pH 8.0, 200 mM NaCl, 10% Glycerol and 1 mM TCEP). Analysis was performed at room temperature with 100 µl Ska complex that was pre-diluted in running buffer from 6.7 mg/ml to 1 mg/ml.
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2

SEC-MALS Analysis of Autophagy Proteins

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Size exclusion chromatography–MALS (SEC–MALS) measurements were performed on a HP1100 HPLC system (Agilent) using a Superdex-200 Increase 10/300GL (GE-Healthcare, Atg1) or a Superose-6 10/300GL (GE-Healthcare, Atg1PC) column. The MALS signal was recorded on-line using a miniDAWN Treos MALS detector (Wyatt) and the corresponding protein concentration was determined with an Optilab t-Rex RI detector (Wyatt). Atg1 was injected at a concentration of 5 mg ml−1 and Atg1PC at a concentration of 3.4 mg ml−1 in a volume of 50 μl and 100 μl, respectively. SEC–MALS data were analysed using the Astra software package (Wyatt) applying the Zimm light scattering model. The molar mass at the concentration peak apex (MW max, refractive index peak apex) and the weight-average molar mass of the respective peak (MW peak, ultraviolet peak borders selected by hand) were determined.
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3

SEC-MALS and Mass Photometry of Ndc80 Complex

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Full‐length and loopless Ndc80 complexes were analyzed by SEC‐MALS on a Dawn Heleos II System with an Optilab T‐rEX RI detector (Wyatt) and a 1260 Infinity II LC system (Agilent). The Superose 6 increase 10/300 column (GE Healthcare) was pre‐equilibrated with glycerol‐free Ndc80 buffer (50 mM HEPES pH 8.0, 250 mM NaCl, and 2 mM TCEP). Analysis was performed at room temperature with 60 μl full‐length or loopless Ndc80 complex that was diluted in running buffer to 2 mg/ml. Mass photometry was performed on a Refeyn TwoMP System (Refeyn) that was calibrated with a mixture of BSA (66.5 and 123 kDa) and Thyroglobulin (330 and 660 kDa). Ndc80 complexes were diluted to a concentration of 100 nM in glycerol‐free Ndc80 buffer and analyzed in 20 μL droplets following a 10‐fold dilution in buffer to 10 nM. Data were analyzed and plotted using the DiscoverMP software (Refeyn).
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4

Characterization of eIF2B Subunit Complexes

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Complex formation between eIF2Bα, -β and -δ was studied by size exclusion chromatography (SEC) on an analytical Superdex 200 (10/300) column (GE Healthcare). For standard runs of the subunits, 50 μg protein in a total volume of 200 μl was loaded onto the column equilibrated in running buffer (90 mM KCl, 10 mM NaCl, 20 mM Tris/HCl (pH 7.5) and 2 mM DTT). For the analysis of binary complex formation between two subunits, 50 μg of each protein were mixed in 200 μl running buffer and incubated for 5 min at 20°C before loading onto the column. To study complex formation between all three subunits, eIF2Bβ (50 μg) was first mixed with a ∼2-fold excess of eIF2Bα (100 μg), followed by the addition of eIF2Bδ in ∼1.5-fold excess over the β-subunit (80 μg). The mixture was incubated for 5 min at 20°C in 200 μl running buffer before loading onto the column. Runs were monitored at an absorption wavelength of 280 nm. Apparent molecular weights (MWapp) were estimated using a protein standard giving MWapp = 10−0.179·V+4.631 (where V is the elution volume).
The absolute molecular weight (MW) of the proteins and protein complexes was determined by multi angle light scattering (MALS). Samples were run on the SEC column, connected to a miniDAWN TREOS LS detector and an Optilab T-rEX RI detector (Wyatt Technology). MW values were calculated using the ASTRA software (Wyatt Technology).
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5

SEC-MALS Analysis of P22-Cas9 Complex

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P22-Cas9 and WT P22 were injected using an Agilent 1200 autosampler with 100 mM phosphate, 50 mM sodium chloride, pH 7.0 buffer. The buffer was degassed using an inline degasser. Samples were run over a WTC-100S5G guard column (Wyatt Technology Corporation) and a WTC-100S5 SEC column designed specifically for MALS (Wyatt Technology Corporation). The eluant was monitored using an in-line UV-Vis detector on the Agilent system as well as a Dawn Heleos 8 MALS detector and an Optilab T-rex RI detector (Wyatt Technology Corporation). All data were analyzed using ASTRA software from Wyatt. Samples were stored in the autosampler at room temperature, and the sample chamber in the RI detector was held at 25°C to reduce thermal drift. Molecular weights were determined from MALS and RI signals using the ASTRA software and dn/dc values of 0.185 was used for all proteins. The Cas9/P22 ratio was determined by subtracting the molecular weight of P22-Cas9 from P22 WT (see Figure 2c) and dividing by the molecular weight of Cas9.
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6

Oligomeric state analysis of SPACA6

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The oligomeric state of tag-removed, fully glycosylated SPACA6 was assessed by SEC-MALS. 0.14 mg Bovine Serum Albumin (BSA) and 0.14 mg SPACA6 were prepared in 1X PBS at a concentration of 1.2 mg mL−1. A Superdex 75 10/300 GL size-exclusion column (Cytiva/GE) was equilibrated overnight with 5 CV PBS. Monomeric BSA (MW = 66,432 Da) was used as a reference calibration standard. Prior to SEC-MALS analysis, each sample was centrifuged at 15,000 × g for 15 min at 4 °C and then the supernatant was loaded onto the size-exclusion column on an AKTA Pure FPLC (Cytiva) at 0.2 mL min−1. Triple detection was performed by measuring absorbance at 280 nm using the integrated UV monitor on the AKTA Pure, three-angle light scattering using the miniDAWN TREOS MALS detector (Wyatt) and refractive index (RI) using Optilab T-rEX RI detector (Wyatt). The data were processed, and weight-averaged molecular mass was calculated using the ASTRA software package (version 7.0.2.11).
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7

Size-Exclusion HPLC for Macromolecular Analysis

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Size-exclusion high-performance liquid chromatography with light scattering detection (SE-HPLC-LS) was performed using a 1100 HPLC system (Agilent) with TSK-GEL G3000SWxl, 5-μm particle size, 7.8 mm ID × 300-mm length column (Tosoh Biosep, Merck KGaA). Samples were injected neat into the SE-HPLC-LS system. Runs were performed at room temperature with 100 mM sodium phosphate, 250 mM sodium chloride, and pH 6.8 buffer used as mobile phase; flow rate was 0.5 mL/min. Detectors included a HELEOS MALS detector (Wyatt Technology), an Optilab TrEX RI detector (Wyatt), and a UV detector (Agilent) set at 280 nm. The refractive index increment, dn/dc = 0.185 (mL/g), was used for calculation of molecular mass. Results were reported as the molar mass of monomer and HMW species using Wyatt ASTRA software.
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8

Size-Exclusion Chromatography of Proteins

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Single amino acid substituted constructs were purified as described above but without a MonoQ purification step after TEV cleavage. Concentrated protein was diluted into running buffer (TRIS 20 mM, NaCl 150 mM, TCEP 1 mM, pH 7.6) to a concentration of 40 μM, spun at 20000xg for 30 min at +4°C and transferred to new tubes. 100 μL were injected onto a Superdex 200 10/30 GL Increase column (GE Healthcare), connected to an Akta chromatography system, eluted in running buffer at 0.5 ml/min and room temp. UV at 280 nm was measured with the Akta system detector, the RI and light scattering data was collected with an Optilab T-rEX RI detector (Wyatt Technology) and a Dawn Heleos II scattering detector (Wyatt Technology), respectively. Molecular weights were calculated from RI and light scattering data using the Astra 6.1 software (Wyatt Technology).
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9

SEC-MALS Analysis of P. aeruginosa Chaperones

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SEC-MALS was employed to probe the oligomeric states of the isolated chaperones of P. aeruginosa. The purified proteins were concentrated to 2 mg/ml using centrifugal filters with either 3 kDa or 30 kDa cut-off (Amicon Ultra-0.5, Merck/Millipore) and the samples were centrifuged at 100,000 g, 4°C for 1 h to remove occasional aggregates. Subsequently, 80–200 µL were injected on Superdex 200 Increase 10/300 GL column (Cytiva) connected to miniDAWN TREOS II light scattering device and Optilab-TrEX Ri-detector (Wyatt Technology Corp.). FkpA, SurA and PpiD were analysed in 50 mM KCl, 5 mM MgCl2 and 20 mM HEPES-KOH pH 7.4; YfgM in 5 mM glycine, 20 mM NaCl and 5 mM Tris-HCl pH 8.5; Skp in 100 mM NaCl and 20 mM Tris-HCl pH 8.0, and LipH in 100 mM NaCl, 200 µM TCEP and 50 mM Tris-HCl pH 8.0. The data analysis was performed with ASTRA 7.3.2 software (Wyatt Technology Corp.).
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10

SEC-MALS Analysis of Rel-DarB Interaction

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The interaction of the full-length Rel protein or RelNTD with DarB or DarBA25G,R132M was analyzed by size-exclusion chromatography and multi-angle light scattering (SEC-MALS). For this purpose, the purified tag-free proteins were either alone or pre-mixed in a 1:1 ratio in storage buffer (for full-lenght Rel) or 1× ZAP buffer (for RelNTD) (~1 mg/ml each) applied onto the column. The buffer was filtered (0.1 µm filters) and degassed in line (Model 2003, Biotech AB/Sweden) prior to protein separation on a S200 Superdex 10/300GL column on an Äkta Purifier (both GE Healthcare). Subsequently, the eluate was analyzed in line with a miniDawn Treos multi angle light scattering system followed by an Optilab T-rEX RI detector (both from Wyatt Technology, Europe) before fractionation. The elution fractions were analyzed with SDS-PAGE. Data analysis was performed using the ASTRA 6.1 software (Wyatt Technology) and also compared to a gel filtration standard (Bio-Rad).
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