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Pgex 6p 1 plasmid

Manufactured by GE Healthcare
Sourced in United Kingdom

The PGEX-6P-1 plasmid is a vector used for the expression of recombinant proteins in Escherichia coli. It contains the tac promoter, which allows for inducible expression of the target gene, and the glutathione S-transferase (GST) coding sequence, which can be used to purify the expressed protein.

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16 protocols using pgex 6p 1 plasmid

1

Purification and Expression of Arabidopsis MKK Proteins

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The sequence coding for 6×His tag-labelled ΔMKD1 (ΔMKD1) was amplified by RT-PCR using specific primers (see Supplementary Table S1). The amplified PCR products were introduced into SgfI and PmeI sites of the pF3KWG (BYDV) Flexi plasmid (Promega). The ΔMKD1 protein was synthesized using the TNT SP6 High-Yield Wheat Germ Protein Expression System (Promega). In vitro transcription/translation was performed according to the manufacturer’s instructions. The ΔMKD1 protein was purified using a Ni Sepharose High-Performance column (GE Healthcare). MKK1, MKK2, and MKK5 were amplified from cDNA by PCR using specific primers (Supplementary Table S1). Amplified fragments of MKK1, MKK2, and MKK5 were cloned into SmaI and NotI (blunt ended) sites of the pGEX6p-1 plasmid (GE Healthcare). MKK1, MKK2, and MKK5 plasmids were transformed into E. coli BL21-CodonPlus (DE3)-RIL (Agilent Technologies). The recombinant proteins glutathione S-transferase (GST)–MKK1, GST–MKK2, and GST–MKK5 were digested by PreScission Protease (GE Healthcare). The resulting MKK1, MKK2, and MKK5 proteins were purified using a glutathione Sepharose 4 Fast Flow column (GE Healthcare).
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2

Cloning and Purification of Recombinant Helicobacter Proteins

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The gene sequences of ureB, hspA, and ureB-hspA were amplified by PCR from the vaccine SH02, cloned into an expression vector pGEX-6P-1(+) plasmid (GE Healthcare, Pittsburgh, USA), and placed between BamHI and NotI restriction sites (UreB-F: 5′-CGCGGATCCAAAAAGATTAGCAGAAAAG-3′, UreB-R: 5′-AAATATGCGGCCGCCTAGAAAATGCTAAAGAG-3′; HspA-F: 5′-CGCGGATCCAAGTTTCAACCATTAG-3′, HspA-R: 5′-AAATATGCGGCCGCTTAGTGTTTTTTGTGATC-3′; UreB-HspA-F: 5′- CGCGGATCCAAAAAGATTAGCAGAAAAG-3′, UreB-HspA-R: 5′- AAATATGCGGCCGCTTAGTGTTTTTTGTGATC-3′). The recombinant plasmid was transformed into Escherichia coli (E. coli) BL21 (DE3) cells (Cwbio, Suzhou, China), and protein expression was subsequently induced with 1 mM IPTG at 20°C before being harvested after 18 hours by centrifugation. The bacterial pellets were resuspended in PBS and sonicated. Any insoluble cellular components were removed by centrifugation, and the rGST-UreB, rGST-HspA, and rGST-UreB-HspA fusion proteins were purified by Price Glutathione Superflow Agarose (Thermo, Rockford, USA) according to the manufacturer’s protocol. Moreover, the GST tag was excised with PreScission Protease (Beyotime, Nanjing, China) and removed with GST-tag Purification resin (Beyotime, Nanjing, China). Finally, the purity and concentration of the recombinant protein rUreB, rHspA, and rUreB-HspA were determined via SDS-PAGE, Western Blot, and BCA assay.
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3

Probing TAPP1 PH Domain Binding Dynamics

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The PH domain of TAPP1 (amino acids 182–303) was amplified from HeLa cell cDNA using a forward primer (5'-CGGGATCCTTTTACTCCTAAACCACCTAA-3') and a reverse primer (5'-GGAATTCTCAGGGATGCTCAGAA GACGCAGA-3'), digested with BamHI and EcoRI, and integrated to the pGEX-6P-1 plasmid (GE Healthcare). The mutant probe TAPP1(R211L), in which binding with PtdIns(3,4)P2 is abrogated by replacement of the 211st arginine of TAPP1 to leucine [6 (link)], was generated by polymerase chain reaction using the following primer sets: 5'-GGAGCAGTGATGAAAAACTGGAAGAGACTATATTTTCAATTGG-3' and 5'-CCAATTGAAAATATAGTCTCTTCCAGTTTTTCATCACTGCTCC-3'. GST-tagged recombinant proteins expressed in BL21 Escherichia coli cells were purified using glutathione-agarose (Sigma-Aldrich) and dialyzed to phosphate-buffered saline (PBS).
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4

TDG P65A Mutant Production and Characterization

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The TDG P65A mutant was produced by site-directed mutagenesis, exchanging the codon for proline 65 (CCC) into an alanine codon (GCC). TDG wt and the mutant TDG P65A were cloned into the BglII/SacI cloning sites of pSG5 plasmid (Agilent) to obtain HA-fusion proteins. CBP was cloned into the BglII cloning site of pEYFP plasmid (Clontech). Flag-RARα fusion proteins have been described previously [7] (link). For bacterial expression, full-length TDG (residues 1–410), its isolated N-terminal domain (residues 1–111) and the corresponding P65A mutants were cloned into the BamHI/EcoRI cloning sites of pGEX-6P-1 plasmid (GE Healthcare).
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5

Recombinant IBV nsp9 Mutations

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The cDNA encoding IBV strain M41 ORF1a polyprotein was provided by Professor Ming Liao (South China Agricultural University, People's Republic of China). IBV nsp9 was cloned into a pGEX‐6P‐1 plasmid (GE Healthcare) using BamHI and XhoI restriction sites. The F73G, L86G, F88G, I95D, G98D, and G102D single‐site mutations were generated using primers encoding the mutated amino acids. Mutagenesis constructs were confirmed by commercial DNA sequencing (Sangon Biotech).
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6

Cloning and Expression of CopN Proteins

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Full-length copN genes [CpcopN: C. pneumoniae TW183, CpB0334 (NC_005043.1); CtcopN: C. trachomatis UW-3/CX serovar D, CT_089 (NC_000117.1)] were amplified from each of the genomic DNA templates. The amplified DNA products were cloned to the downstream of glutathione S-transferase (GST) gene region into pGEX-6P-1 plasmid (GE Healthcare Bio-Sciences AB, Uppsala, Sweden). pGEX-6P-1 plasmid was kindly provided by I. Hirai, University of the Ryukyus (Okinawa, Japan). GST-fused recombinant proteins were finally expressed in Escherichia coli BL21 (DE3) in Luria–Bertani medium with 0.1-mM isopropyl-1-thio-β-d-galactopyranoside for 4 h at 37°C. The bacteria were collected by centrifugation and then lysed chemically using bacterial protein extraction reagent (Thermo Fisher Scientific, Waltham, MA, USA). After centrifugation to remove bacterial debris, GST-fusion proteins were prepared from the supernatant by using glutathione–agarose beads (Thermo Fisher Scientific) and the protein concentrations were determined using the Bradford assay. The solutions were adequately dispensed and stored at −80°C until use.
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7

Cloning and Purification of HtrA Protease from H. pylori

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Cloning and purification of HtrA from H. pylori strain 26695 was done as described (Löwer et al., 2008). Briefly, the htrA gene of ORFs HP1018/1019 was amplified from genomic DNA. The amplified BamHI/EcoRI flanked PCR product was then ligated into the pGEX‐6P‐1 plasmid (GE Healthcare Life Sciences) and transformed in E. coli strain BL21. For purification of GST‐HtrA, transformed E. coli was grown in 500 ml TB medium to an OD550nm of 0.6, and the expression was induced by the addition of 0.1 mM isopropylthiogalactosid (IPTG). The bacterial culture was pelleted at 4,000× g for 30 min and lysed in 25 ml PBS buffer by sonification. The lysate was cleared by centrifugation, and the supernatant was incubated with glutathione sepharose (GE Healthcare Life Sciences) at 4°C over night. HtrA was eluted with 180 U Prescission Protease for 16 h at 4°C (GE Healthcare Life Sciences). Cleavage products were analysed by SDS‐PAGE and zymography as described (Löwer et al., 2008; Hoy et al., 2010).
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8

Plasmid Construction for Gene Expression

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To generate the GST-YB1 plasmid, the mouse YB1 coding sequence was amplified by PCR and cloned into the pGEX-6P-1 plasmid (GE Healthcare). GFP-HuR was prepared by PCR using the GST-HuR (39 (link)) plasmid as a template. The PCR fragments were then cloned into the pAcGFP1-C1 vector (BD Biosciences). GFP-Myog was prepared by PCR amplification of the mouse Myog coding sequence and 3′UTR which was the cloned into the pAcGFP1-C1 vector (BD Biosciences) (20 (link)). To generate the pRL-Myog-3′UTR plasmid, the full-length 3′-UTR of mouse Myog was amplified by PCR and cloned into the pRL-SV40 plasmid (Promega). pRL-Myog-3′UTR or GFP-Myog mutants were generated by Norclone Biotech Laboratories, London, ON, Canada. Full sequence is detailed in Supplementary Table S10.
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9

Recombinant SORBS1 Protein Pulldown

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Recombinant SORBS1 protein (Abcam; Cambridge, UK) was incubated with recombinant GST-DOCK3-PXXP or GST alone plasmids (constructs cloned into pGEX-6P-1 plasmid; GE Healthcare; Chicago, IL) in GST reaction buffer (250 mM Tris-HCl at pH 7.4, 500 mM NaCl, 25 mM MgCl2, 5 mM dithiothreitol, 0.5 mM EGTA and 20 mM freshly prepared ATP) for one hour at 4°C on a rotator. Pierce Glutathione Magnetic Agarose Beads (ThermoFisher; Cat# 78602) were then suspended in the GST reaction buffer and added to the reaction mixture for one hour at 4°C with gentle rotation. The beads were then washed four times in reaction buffer using a DynaMag magnet. Laemmli Buffer plus β-mercaptoethanol was added to these samples, which were then boiled for five minutes at 100°C. GST pulldown was verified via immunoblot against the GST epitope (anti-GST; rabbit polyclonal; Abcam; Cat# ab9085).
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10

Cloning and Expression of Recombinant Proteins

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Glutathione S-transferase (GST) fusion constructs were prepared to be able to produce PRK proteins in bacteria. For this purpose, a cDNA library was prepared from wild-type C. elegans samples using the Maxima H minus first strand synthesis kit (Thermo Fisher Scientific) according to the manufacturer’s instructions. The prk-1 cDNA (isoform A, amino acids 1–530) was amplified from there with the prk-1 primers described in the previous section, and ligated into the pGEX-6P-1 plasmid (GE Healthcare) between BamHI and XhoI sites. Full-length prk-2 cDNA was subcloned from the rab-3:prk-2 plasmid (Zheng et al., 2011 (link); kindly provided by Michael Nonet, Washington University, St. Louis, MO), and ligated between EcoRI and SmaI sites in the pGEX-6P-2 plasmid. Preparation of GST-tagged human PIM1 (full-length short isoform) has been previously described (Santio et al., 2016 (link)), and GST-tagged human NFATC1 (amino acids 1–418) was a kind gift from S. N. Ho (Stanford University, Stanford, CA).
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