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16 protocols using lionheart lx

1

Automated Viral Infection Imaging

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All images were taken on a Lionheart LX (BioTek) automated imaging system. Cells were stained with NucBlue Live reagent (Hoechst 33342 dye) in addition to inherent viral GFP produced from infected cells. All images were captured using a 10× lens, and multiple images were taken together and stitched automatically by the BioTeK software.
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2

Automated Droplet Analysis System

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For droplet readout, 10 µL of the generated emulsion was pipetted on a commercially available counting chamber chip allowing the analysis of the droplets in a monolayer (C-Chip PK36.1, Carl Roth GmbH & Co. KG, Karlsruhe, Germany).
Bright field images were recorded with the microscope Observer Z1 (Zeiss GmbH, Jena, Germany), followed by an automated droplet diameter measurement using a custom-made ImageJ-Script (for details see ESI 2, S2).
Fluorescence images were recorded with the automatic microscope Lionheart LX (Biotek Instruments GmbH, Bad Friedrichshall, Germany) followed by automated droplet readout and counting using the software (Gen5 Image Prime, Biotek GmbH, Bad Friedrichshall, Germany).
Graphs were generated by using the graphing software Origin Pro 9 (OriginLab Corp., Northampton, MA, USA).
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3

Fluorescence Imaging Microscopy Protocol

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Fluorescent images taken in this study were procured using a
fluorescence microscope Lionheart LX (BioTek). This imaging system comes with an
automated focusing system that can be calibrated to adjust the exposure prior to
imaging. Images were analyzed using the Gen5 software that comes standard with
the instruments.
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4

Assessing Skeletal Muscle Cross-Sectional Area

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To assess skeletal muscle cross-sectional area (CSA), 10 μm-thick cryosections taken at the mid-belly of the tibialis anterior muscle were processed for immunostaining, as described previously.25 (link) Sections were blocked in 8% bovine serum albumin for 1 h at room temperature and incubated at 4°C overnight in dystrophin primary antibody (#MANDRA11 (8B11); Developmental Studies Hybridoma Bank, Iowa City, IA, USA), followed by incubation in secondary antibody (AlexaFlour 555 # A-21127; Thermo Fisher Scientific, Waltham, MA, USA) for 1 hour at room temperature. Sections were then washed, mounted, and imaged using a Lionheart LX automated microscope (BioTek Instruments).
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5

Immunofluorescence Analysis of Macrophage Proteins

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RAW264.7 macrophages were fixed with 4% paraformaldehyde for 15 min and permeated with 0.3% Triton X-100 for 15 min at room temperature. After washed with PBS for 1 h, the cells were incubated with primary antibodies against hnRNPK, FLIP and NLRP3 (Abcam) at 4 °C overnight. The coverslips were exposed to Alexa Fluor conjugated-secondary antibodies (Cell Signaling Technology) for 1 h in the dark. The nucleus was marked with 4′, 6-Diamidino-2-phenylindole (DAPI). The stained images were observed using an Inverted/Fluorescence Microscope (LIONHEART LX, BioTek).
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6

Histological Evaluation of Subcutaneous Implants

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After euthanasia, the subcutaneous implants were fixed with 10% formalin. Following fixation, the implants were washed and placed into a processor that dehydrated the samples in 70% alcohol, followed by 95%, 100%, and xylene. The samples were then embedded in paraffin and cut into slices of 5 microns using a microtome (Accu-Cut SRM 200 Rotary Microtomoe, Sakura Finetek USA, CA). Slides were stained with hematoxylin and eosin (H&E) and Goldner’s trichrome (Sigma-Aldrich). Images were obtained with Lionheart LX (Biotek Instruments Inc, Winooski, VT) at 4× and captured using Gen 5 software.
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7

Histological Analysis of Subcutaneous Implants

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After euthanasia, at 4 weeks post-surgery, the subcutaneous implants were fixed with 10% formalin. Following fixation, the implants were washed and placed into a processor which dehydrated the samples sequentially in 70%, 95% and 100% alcohol, followed by xylene. The samples were then embedded in paraffin and cut into slices of 5 microns using a microtome (Accu-Cut SRM 200 Rotary Microtomoe, Sakura Finetek USA, Torrance, CA, USA). Slides were stained with Hematoxylin and Eosin (H&E) and Goldner’s trichrome (Sigma-Aldrich). Images were obtained with Lionheart LX (Biotek Instruments Inc., Winooski, VT, USA) at 4× and captured using Gen 5 software (Biotek Instruments Inc., Winooski, VT, USA)).
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8

Immunocytochemical Analysis of CAF Markers

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CAFs were fixed with 4% paraformaldehyde (PFA, Cat. No.158,127; MERCK/Sigma-Aldrich, Darmstadt, Germany) for 30 min and then permeabilized with Triton X-100 (0.01%, Thermo Fisher Scientific, MA, USA) for 10 min. After blocking with 0.1% bovine serum albumin (BSA), the cells were incubated with primary antibody overnight at 4°C. The primary antibodies were as follows: FAP (1:100, #66,562, Cell Signaling Technology/CST, MA, USA), Vimentin (1:150, #5741, CST, MA, USA), and α-SMA (1:100, #19,245, CST, MA, USA). After washing, the samples were incubated with goat anti-rabbit IgG (Alexa Fluor® 488, ab150077, Cambridge, UK) for 30 min. The cells were counterstained with DAPI (1 mg/mL, Sigma-Aldrich, Missouri, USA) and blocked with glycerin. Staining was visualized using a fluorescence microscope (Lionheart LX, BioTeK, Vermont, USA).
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9

MCF-7 Spheroid Imaging Protocol

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MCF-7 spheroid uptake experiments
were imaged with a Lionheart LX Automated Microscope (BioTek, Winooski,
VT). The Lionheart LX microscope has 4 LED/filter cubes corresponding
to DAPI, GFP, Texas Red, and Cy7 and is controlled using BioTek’s
Gen 5 software. Confocal microscopy for LIVE/DEAD imaging was performed
by using a Molecular Devices ImageXpress Microscope confocal microscope
with a Lumencor light engine as the laser source.
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10

Exosome-Mediated Oxidative Stress Modulation

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Briefly, BV2 cells were cultured with complete medium overnight for adherence and were stimulated with serum-free medium for 1 h, pre-treated with Exos or Exos-138 (108 particles/mL) for 12 h, and then stimulated with 200 μM H2O2 for 6 h in 12 mm glass cell culture chambers (ThermoFisher, Scoresby, VIC, Australia). Then, DCFH-DA was used to stain the cells for 30 min under the conditions of 37°C and 5% CO2. Intracellular ROS production was determined using a ROS detection kit. The fluorescence intensity was measured using a Cytation 5 Cell Imaging Multimode Reader (BioTek LionheartLX) and analysed using the ImageJ software.
The spinal cords of all groups were collected in vivo and frozen sections were prepared. A frozen section ROS detection kit (BioRab Technology, Beijing, China) was used. The fluorescence was detected at 525 nm using a Nikon Eclipse Ti-SR microscope (Nikon, Japan).
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