The largest database of trusted experimental protocols

7900ht qpcr system thermal cycler

Manufactured by Thermo Fisher Scientific
Sourced in United States

The 7900HT qPCR system thermal cycler is a real-time PCR instrument designed for quantitative gene expression analysis. It features a 96-well sample block and can perform fast, standard, and ultra-fast PCR protocols.

Automatically generated - may contain errors

5 protocols using 7900ht qpcr system thermal cycler

1

Quantitative RT-PCR for Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the cells and tissues using the Trizol reagent (Invitrogen). Approximately 1 μg of RNA was used for the reverse transcription reaction using the PrimeScript™ RT reagent Kit with gDNA Eraser (Vazyme). The cDNA was amplified with the following primers: 5′-CACAGACCTGGCCCGTTTT-3′ (forward) and 5′- AGTCCGGCCTTTCTTTTTGC-3′ (reverse) for ING4; 5′-CTTCCAAGTCTGGAGCGATGT-3′ (forward) and 5′-TACCGTCAAAGGGGTATCCAT-3′ (reverse) for MMP-2; 5′-GTACTCGACCTGTACCAGCG-3′ (forward) and 5′-AGAAGCCCCACTTCTTGTCG-3′ (reverse) for MMP-9; 5′-TCTCGACATCGAGGACCCAT-3′ (forward) and 5′-TGGACCAGTCGAAACCCTTG-3′ (reverse) for TIMP-2; 5′-CTGTCTAATGCCCTGGAGCC-3′ (forward) and 5′-ACGCGAGTCTGTGTTTTTGC-3′ (reverse) for VEGF; 5′-CTGGCGCTCAGCCATACAG′ (forward) and 5′-CGCACTTATACTGGTCAAATCCC′ (reverse) for COX-2; 5′-GGTGCCTTTTCACAGGCTC'-3′ (forward) and 5′-GCTGTTCTCATTGGGTGACTC-3′ (reverse) for Sp1; 5′-GCCGGTGCTGAGTATGTC-3′ (forward) and 5′-CTTCTGGGTGGCAGTGAT-3′ (reverse) for GAPDH.
Real time PCR was carried out in triplicate with SYBR Green PCR Master Mix using a 7900HT qPCR system thermal cycler (Applied Biosystems) as described previously [37 (link)]. GAPDH mRNA was used as an internal control for each sample, and the Ct value for each sample was normalized to GAPDH mRNA.
+ Open protocol
+ Expand
2

Quantifying Gene Expression by Real-Time PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA were extracted from collected cells by Trizol (Invitrogen) and reverse‐transcribed (RT) using a cDNA synthesis kit (TaKaRa, China) according to the manufacturer's instructions. The expression of the genes encoding AIM2, ASC, caspase‐1 and IL‐1β was quantified by real‐time PCR using 7900HT qPCR system thermal cycler (Applied Biosystems) and SYBR Green system (TaKaRa) normalized by GAPDH expression following the manufacturer's protocol. Primers were used as following in Table 1.
+ Open protocol
+ Expand
3

Quantitative Analysis of Immune Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA were extracted from collected samples by Trizol (Invitrogen, Eugene, OR, USA) and reverse-transcribed using a cDNA synthesis kit (TaKaRa) according to the manufacturer's instructions. The expression of the genes encoding GAPDH, AIM2, iNOS, CD206, Arg-1, IL-10, IL-12, and TNF-α was quantified by real-time PCR using 7900HT qPCR system thermal cycler (Applied Biosystems) and SYBR Green system (Takara Diagnostic Systems) normalized by the GAPDH expression following the manufacturer's protocol. The used primers were presented in Table 1.

The used primers were presented.

Table 1
Forward primerReverse primer
GAPDH (human)ATCCCATCACCATCTTCCAGGAGTCCTTCCACGATACCAA
GAPDH (murine)ACCACAGTCCATGCCATCACTCCACCACCCTGTTGCTGGTA
AIM2 (human)GGCCCAGCAGGAATCTATCAGCTTGCCTTCTTGGGTCTCA
AIM2 (murine)AGTACCGGGAAATGCTGTTGTTCCTATCTGCCACGTCGAGTGT
iNOS (murine)GAGCTCGGGTTGAAGTGGTATGGAAACTATGGAGCACAGCCACAT
CD206 (murine)TTCAGCTATTGGACGCGAGGGAATCTGACACCCAGCGGAA
Arg-1 (murine)CTCCAAGCCAAAGTCCTTAGAGAGGAGCTGTCATTAGGGACATC
IL-10 (murine)GCTCTTACTGACTGGCATGAGCGCAGCTCTAGGAGCATGTG
IL-12 (murine)GGAAGCACGGCAGCAGAATAAACTTGAGGGAGAAGTAGGAATGG
TNF-α (murine)AAGCCTGTAGCCCACGTCGTAGGCACCACTAGTTGGTTGTCTTTG
+ Open protocol
+ Expand
4

Quantifying TRAP Expression in Osteoclasts

Check if the same lab product or an alternative is used in the 5 most similar protocols
After treatment with RANKL and AGP for 5 days, total RNA was extracted with RNeasy mini kit (Qiagen, USA). The reverse transcription reaction for cDNA was synthesized from about 1 μg total RNA. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) mRNA was used as an internal control for each sample. The specific primers used in our study were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA): mouse GAPDH: forward, 5'-AACGGGAAGCTTGTCATCAATGGAAA-3'; reverse, 5'-GCATCAGCAGAGGGGGCAGAG-3'; mouse TRAP: forward, 5'-CTGGAGTGCACGATGCCAGCGACA-3'; reverse, 5'-TCCGTGCTCGG CGATGGACCAGA-3'. qPCR experiments were performed in triplicate using the SYBR Green PCR Master Mix using a 7900HT qPCR system thermal cycler (Applied Biosystems, USA). The Ct values of samples were normalized to GAPDH mRNA.
+ Open protocol
+ Expand
5

Evaluating Gene Expression Changes After DHM Treatment

Check if the same lab product or an alternative is used in the 5 most similar protocols
After treatment with DHM, the cells were collected and the total RNA was extracted with TRIzol ® reagent (Life Technologies), according to manufacturer instructions. Approximately 1 μg RNA was used for the reverse transcription reaction by using Oligo dT (18T) (Omega, USA). The cDNA products were amplified for bcl-2, bax, and p53 gene expression via qRT-PCR by using specific primers as shown in Table 1. PCR was carried out in triplicate with SYBR Green PCR Master Mix by using a 7900HT qPCR system thermal cycler (Applied Biosystems, USA). GAPDH mRNA was used as internal control for each sample. The Ct values for each sample were normalized to GAPDH mRNA. Results were obtained from 4 independent experiments.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!