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6 protocols using 2 deoxy d glucose 2dg

1

In Vitro and In Vivo Assessment of H+, K+-ATPase Inhibitors

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JP1366 and TAK‐438 (purchased from Sigma‐Aldrich) were dissolved in dimethyl sulfoxide to assess their effect on H+, K+‐ATPase activity in vitro. In the in vivo experiments, JP1366 and TAK‐438 were administered orally as a suspension in 0.5% methylcellulose solution. Lansoprazole was administered orally as a suspension in 0.5% methylcellulose solution containing 1% NaHCO3. Each compound was administered intravenously as a solution in a mixture of N, N‐dimethylacetamide and polyethylene glycol 400 at a volume ratio of 1:1. Histamine 2HCl and 2‐deoxy‐D‐glucose (2DG) were obtained from Wako Pure Chemicals. All of the other reagents and solvents used were of the best grade available.
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2

Anticancer Effects of 2-Deoxy-D-glucose

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2-Deoxy-D-glucose (2DG; Wako) was used as a anticancer agent. The reaction mixture consisted of 1 mL of cell suspensions (1.0 × 106 cells/mL) of the HSC-2 cells and 3.5 mL of saline. Firstly, this reaction mixture was set to the pH stat at pH 7.5 and pre-incubated at 37 °C with stirring for 10 min. Then, glucose (250 μL) was added to the reaction mixture at a final concentration of 10 mM, and their acid-producing activity was monitored for 10 min. At 10 min after the glucose addition, 2DG (250 μL) was added to the reaction mixture at a final concentrations of 2 mM and the acid-producing activity was further monitored for 20 min. Similarly, saline was added instead of the 2DG in control group.
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3

Establishment and Culture of MIN6-K8 and Got1 KO Cells

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MIN6-K8 cells were established as described previously [24 (link)]. Got1 KO-1 and -2 cells were established by sub-cloning of MIN6-K8 cells transfected with Cas9 nickase and guide RNA pairs targeting mouse Got1 as described previously [25 (link)]. Got1 KO-1 and -2 cells refer to clones A60 and A64, in Murao et al. [25 (link)], respectively. MIN6-K8 and Got1 KO cells were cultured in Dulbecco's Modified Eagle Medium (high glucose) (DMEM-HG, Sigma) containing 4500 mg/L glucose supplemented with 10% fetal bovine serum (FBS) (BioWest) and 5 ppm 2-mercaptoethanol. For treatment with HG, LD, or 2DG (Figure 6A, Supplementary Table 5), the respective culture media were prepared by adding glucose, l-glutamine, and 2-deoxy-d-glucose (2DG) (Wako) to DMEM without glucose (Sigma) according to the manufacturer's instructions. AD293 cells were purchased from Agilent and cultured in DMEM supplemented with 10% FBS, 1 mM sodium pyruvate, and 5 ppm 2-mercaptoethanol. All cells were maintained at 37 °C with 5% CO2.
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4

Chromatin Modification and Cell Signaling Assay

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Cell Signaling antibodies (Danvers, MA): H3K9ac (Cat# 9649), H3K18ac (Cat# 9675), H3K27ac (Cat# 4353), H3K4me2 (Cat# 9725), H3K9me2 (Cat# 4658), H3K27me3 (Cat# 9733), Histone H3 (Cat# 4499), GAPDH (Cat# 5174), cleaved caspase-3 (Cat# 9661), HRP-linked anti-rabbit IgG (Cat# 7074) and HRP-linked anti-mouse IgG (Cat# 7076). DAKO (Glostrup, Denmark) antibodies: Ki-67 (Cat# M7240) and ACTH (Cat# N1531). Chemicon International antibodies (Temecula, CA): GLUT-1 (Cat# AB1341). Abcam (Cambridge, UK) antibodies: TPIT (Cat# ab243028) and SF1 (Cat# ab168380). Santa Cruz (Dallas, TX) antibodies: PIT1 (Cat# sc-393943). Reagents used are sodium acetate (Sigma-Aldrich, St. Louis, MO; Cat# S5636), PP242 (Cayman Chemical, Ann Arbor, MI, Cat# 13643), BPTES (Selleck, Houston, TX, Cat# S7753), 2-Deoxy-D-Glucose (2-DG) (FUJIFILM Wako, Osaka, Japan, Cat# 040-06481) and L1H1-7OTD (Cosmo Bio, Tokyo, Japan, Cat# TAT-004). Information on antibodies used in the study was summarized in Table 1.
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5

Yeast Culture and Manipulation Protocol

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The standard technique for the yeast culture and manipulation was used (Guthrie and Fink, 2002 ). Synthetic medium (SC) was prepared as described by Hanscho et al., 2012 (link). 2-Deoxy-D-glucose (2DG), tunicamycin, and MG132 were purchased from FUJIFILM Wako (cat. # 046-06483, 202-08241, and 139-18451, respectively). tunicamycin and MG132 were dissolved in DMSO to make stock solutions (5 mg/ml and 42 mM, respectively). Cells were grown to the mid-log phase at 30°C in SC before imaging unless otherwise noted.
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6

Comprehensive Chemical Compound Catalog

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The Prestwick Chemical Library was purchased from PerkinElmer. Dimethyl sulfoxide (DMSO), 2-deoxy-d-glucose (2-DG), diazoxide, cyclosporin A (CsA), N-acetyl cysteine (NAC), IPA-3, bifonazole, verapamil, tunicamycin, and thapsigargin were purchased from Wako. Carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazone (FCCP), deferoxamine mesylate, importazole, ivermectin, and oligomycin A were purchased from Sigma-Aldrich. Mito-TEMPO was purchased from Enzo Life Sciences. Compound 968 was purchased from Calbiochem. Dexrazoxane was purchased from TCI Chemicals. Cariporide was purchased from Cayman Chemical. Nifuroxazide was purchased from MP Biomedicals. 2-Methylthioadenosine triphosphate (2-meSATP) was purchased from Tocris. Azoramide was purchased from Ark Pharm, Inc.
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