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5 protocols using anti myc

1

Immunoprecipitation-Western Blot Analysis

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Whole-cell proteins were extracted from transfected HEK293T cell lines as previously described (Western blotting). A total of 3000 μg protein extract was incubated overnight at 4°C with either EGFP diluted 1:100 sc-9996 (Santa Cruz Biotechnology, Dallas, TX, USA), anti-c-Myc Tag (9E10) Affinity Gel (BioLegend, San Diego, CA, USA), or b-actin 1:100 sc-1616R (Santa Cruz Biotechnology, Dallas, TX, USA). Antigen-antibody complexes were precipitated with protein A/G-Sepharose sc-2003 (Santa Cruz Biotechnology, Dallas, TX, USA) for 1 h at 4°C and washed 3 times with cold PBSX1. Precipitated proteins were then resolved by SDS-PAGE, blotted onto nitrocellulose membranes, and reacted with the appropriate antibodies: enhanced green fluorescent protein (EGFP) diluted 1:1000 sc-9996 (Santa Cruz Biotechnology, Dallas, TX, USA), anti-MYC diluted 1:1000 9E10 (Developmental Studies Hybridoma Bank, The University of Iowa), or anti-actin dilution 1:500 sc-1616R (Santa Cruz Biotechnology, Dallas, TX, USA).
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2

Western Blotting Protocol for Protein Analysis

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Protein samples for western blotting were diluted with 2× sample buffer [125 mM Tris-HCl (pH 6.8), 4% SDS, 19% glycerol, 200 mM DTT, and 0.01% bromophenol blue]. The samples were separated by sodium dodecyl sulfate polyacrylamide electrophoresis (SDS-PAGE) and then blotted onto Nitrocellulose Membrane (FUJIFILM Wako Pure Chemical) or Immobilon-P membrane (Merck). After blocking with 5% skim milk, membranes were incubated with primary antibodies in PBS containing 0.1% Tween (T-PBS) at room temperature. Anti-Mael (this study), anti-Siwi, anti-Spn-E, anti-Qin, anti-Vasa, anti-Ago3 (Nishida et al., 2015 (link)), anti-Vret (Nishida et al., 2020 (link)), anti-Me31B (Nakamura et al., 2001 (link)), anti-Flag M2 (Sigma-Aldrich), anti-β-Tubulin, and anti-Myc (Developmental Studies Hybridoma Bank) antibodies were used as primary antibodies. After washing with T-PBS, membranes were incubated with secondary antibodies in T-PBS at room temperature. Anti-mouse IgG (H+L) HRP (Cappel), anti-mouse Ig HRP TrueBlot ULTRA (Rockland), and anti-rabbit IgG HRP-linked (Cell Signaling Technology) antibodies were used as secondary antibodies. After washing with T-PBS, the membranes were then incubated with ECL Prime Western Blotting Detection Reagent (Cytiva). Images were collected using the ChemiDoc XRS Plus System (Bio-Rad).
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3

Western Blot Antibody Detection Protocol

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Western blotting was performed with anti-myc (Developmental Studies Hybridoma Bank at the University of Iowa, deposited by Dr. J. Michael Bishop, catalog no. 9E 10), anti-HA (Clontech, catalog no. 631207), anti-hIFITM3 (Proteintech Group, catalog no. 11714-1-AP), anti-mIFITM3 (Abcam, catalog no. ab65183), anti-NEDD4 (Millipore, catalog no. 07–049), anti-FLAG (Sigma, catalog no. F7425), anti-actin (Abcam, catalog no. ab3280), or anti-GAPDH (Invitrogen, catalog no. 398600) antibodies. All primary antibodies were used at a 1:1000 dilution. Secondary antibodies, Goat Anti-Mouse IgG, HRP conjugate (Millipore catalog no. 12–349), Goat Anti-Rabbit IgG, HRP-linked (Cell Signaling, catalog no. 70745), and Goat Anti-Mouse, IgG1 Gamma 1 Heavy Chain Specific (SouthernBiotech, catalog no. 1070–05, specifically used for detecting immunoprecipitated protein ubiquitination) were all diluted at 1:20,000.
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4

Visualization of Drosophila Neuromuscular Junction

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Wandering third instar larvae from sparsely populated bottles were collected and dissected in Ca2+-free saline. A detergent-free protocol was used to visualize labeling at the NMJ for anti-Sdc (1:250) [20 (link)], but all other antibodies including anti-HRP [1:2000] (Jackson Immunoresearch), anti-FasII [1:20] (Developmental Studies Hybridoma Bank), and anti-myc [1:3000] (Developmental Studies Hybridoma Bank) were used in the presence of 0.1% Triton as previously described [21 (link)]. Alexa488 goat anti-mouse, Alexa488 goat anti-rabbit, Alexa568 goat anti-rabbit and Alexa568 goat anti-mouse secondary antibodies (Invitrogen) were used at 1:500. Imaging was done on a Nikon C1 laser scanning confocal microscope. Statistical analysis of boutons per NMJ was conducted in Excel by Student’s t-test on larval pelts that were scored blind to genotype.
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5

Western Blot Antibody Validation

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Western blot was performed according to standard protocols. The following antibodies were used: anti-TPK (rabbit, 10942-1-AP, 1:5000; Proteintech, Rosemont, IL, USA), anti-Myc (mouse, 9E 10, 1:2000; Developmental Studies Hybridoma Bank), anti-HA (mouse, M20003, 1:500; Abmart, Shanghai, China), anti-GAPDH (mouse, KC-5G4, 1:3000; Kangcheng, Shanghai, China), anti α-Tubulin (mouse, T6074, 1:100,000; Sigma-Aldrich), anti-mouse HRP (goat, AP308P, 1:10000; Millipore, Billerica, MA, USA), and anti- rabbit HRP (goat, AP307P, 1:10000; Millipore).
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